Cluster: HRGMv2_2735_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2735
- CGC Family ID: CGCFAM_03426
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2735_85 | HRGMv2_2735_85_1 | 1 | 3426 | + | 2.A.6.3.6 |
| STP | HRGMv2_2735_85 | HRGMv2_2735_85_2 | 3430 | 4032 | + | TetR_N |
| TC | HRGMv2_2735_85 | HRGMv2_2735_85_3 | 4182 | 7388 | - | 3.A.25.1.1 |
| TF | HRGMv2_2735_85 | HRGMv2_2735_85_4 | 7597 | 8310 | - | SfsA |
| CAZyme | HRGMv2_2735_85 | HRGMv2_2735_85_5 | 8463 | 9281 | + | CBM13 |
Gene ID: HRGMv2_2735_85_1
Type: TC
Location: 1 - 3426 (+)
Type: TC
Location: 1 - 3426 (+)
Gene ID: HRGMv2_2735_85_2
Type: STP
Location: 3430 - 4032 (+)
Type: STP
Location: 3430 - 4032 (+)
Gene ID: HRGMv2_2735_85_3
Type: TC
Location: 4182 - 7388 (-)
Type: TC
Location: 4182 - 7388 (-)
Gene ID: HRGMv2_2735_85_4
Type: TF
Location: 7597 - 8310 (-)
Type: TF
Location: 7597 - 8310 (-)
Gene ID: HRGMv2_2735_85_5
Type: CAZyme
Location: 8463 - 9281 (+)
Type: CAZyme
Location: 8463 - 9281 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
SFJ001
Species
SFJ001 sp004555865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.