Cluster: HRGMv2_2735_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2735
- CGC Family ID: CGCFAM_10164
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2735_75 | HRGMv2_2735_75_2 | 428 | 1219 | + | 3.A.1.103.4 |
| TC | HRGMv2_2735_75 | HRGMv2_2735_75_3 | 1231 | 1974 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_2735_75 | HRGMv2_2735_75_4 | 2009 | 3874 | + | GT111 | GT8 |
| TC | HRGMv2_2735_75 | HRGMv2_2735_75_5 | 3984 | 4820 | - | 1.A.23.2.1 |
| pfam | HRGMv2_2735_75 | HRGMv2_2735_75_6 | 5085 | 6281 | + | Patatin |
| TC | HRGMv2_2735_75 | HRGMv2_2735_75_7 | 6351 | 8018 | + | 4.A.2.1.17 |
Gene ID: HRGMv2_2735_75_2
Type: TC
Location: 428 - 1219 (+)
Type: TC
Location: 428 - 1219 (+)
Gene ID: HRGMv2_2735_75_3
Type: TC
Location: 1231 - 1974 (+)
Type: TC
Location: 1231 - 1974 (+)
Gene ID: HRGMv2_2735_75_4
Type: CAZyme
Location: 2009 - 3874 (+)
Type: CAZyme
Location: 2009 - 3874 (+)
Gene ID: HRGMv2_2735_75_5
Type: TC
Location: 3984 - 4820 (-)
Type: TC
Location: 3984 - 4820 (-)
Gene ID: HRGMv2_2735_75_6
Type: pfam
Location: 5085 - 6281 (+)
Type: pfam
Location: 5085 - 6281 (+)
Gene ID: HRGMv2_2735_75_7
Type: TC
Location: 6351 - 8018 (+)
Type: TC
Location: 6351 - 8018 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
SFJ001
Species
SFJ001 sp004555865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.