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Cluster: HRGMv2_2735_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2735_56 HRGMv2_2735_56_2 635 2500 + GH25
TF HRGMv2_2735_56 HRGMv2_2735_56_3 2701 3483 - LytTR
CAZyme HRGMv2_2735_56 HRGMv2_2735_56_4 3882 4898 - GT2
TC HRGMv2_2735_56 HRGMv2_2735_56_5 5274 5903 + 9.B.18.1.1
NULL(UNKNOWN) HRGMv2_2735_56 HRGMv2_2735_56_6 6113 6532 + NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2735_56 HRGMv2_2735_56_7 6820 8016 + HTH_AraC | HTH_AraC
TC HRGMv2_2735_56 HRGMv2_2735_56_8 8385 9191 + 1.A.16.1.3
TF HRGMv2_2735_56 HRGMv2_2735_56_9 9659 10021 + Pencillinase_R
peptidase HRGMv2_2735_56 HRGMv2_2735_56_10 10025 11491 + M56.UPW
TC HRGMv2_2735_56 HRGMv2_2735_56_11 11578 13164 - 3.A.9.1.2
Gene ID: HRGMv2_2735_56_2
Type: CAZyme
Location: 635 - 2500 (+)
Gene ID: HRGMv2_2735_56_3
Type: TF
Location: 2701 - 3483 (-)
Gene ID: HRGMv2_2735_56_4
Type: CAZyme
Location: 3882 - 4898 (-)
Gene ID: HRGMv2_2735_56_5
Type: TC
Location: 5274 - 5903 (+)
Gene ID: HRGMv2_2735_56_6
Type:
Location: 6113 - 6532 (+)
Gene ID: HRGMv2_2735_56_7
Type: TF
Location: 6820 - 8016 (+)
Gene ID: HRGMv2_2735_56_8
Type: TC
Location: 8385 - 9191 (+)
Gene ID: HRGMv2_2735_56_9
Type: TF
Location: 9659 - 10021 (+)
Gene ID: HRGMv2_2735_56_10
Type: peptidase
Location: 10025 - 11491 (+)
Gene ID: HRGMv2_2735_56_11
Type: TC
Location: 11578 - 13164 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
SFJ001
→
Species
SFJ001 sp004555865

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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