Cluster: HRGMv2_2735_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2735
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2735_28 | HRGMv2_2735_28_9 | 9854 | 10918 | + | 9.B.18.2.1 |
| pfam | HRGMv2_2735_28 | HRGMv2_2735_28_10 | 10942 | 12075 | + | Epimerase | Polysacc_synt_C |
| pfam | HRGMv2_2735_28 | HRGMv2_2735_28_11 | 12089 | 13264 | + | Epimerase_2 |
| CAZyme | HRGMv2_2735_28 | HRGMv2_2735_28_12 | 13393 | 14610 | + | GT4 |
| CAZyme | HRGMv2_2735_28 | HRGMv2_2735_28_13 | 14662 | 15378 | + | GT2 |
| pfam | HRGMv2_2735_28 | HRGMv2_2735_28_14 | 15375 | 15743 | + | DUF2304 |
| TC | HRGMv2_2735_28 | HRGMv2_2735_28_15 | 15840 | 17267 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_2735_28_9
Type: TC
Location: 9854 - 10918 (+)
Type: TC
Location: 9854 - 10918 (+)
Gene ID: HRGMv2_2735_28_10
Type: pfam
Location: 10942 - 12075 (+)
Type: pfam
Location: 10942 - 12075 (+)
Gene ID: HRGMv2_2735_28_11
Type: pfam
Location: 12089 - 13264 (+)
Type: pfam
Location: 12089 - 13264 (+)
Gene ID: HRGMv2_2735_28_12
Type: CAZyme
Location: 13393 - 14610 (+)
Type: CAZyme
Location: 13393 - 14610 (+)
Gene ID: HRGMv2_2735_28_13
Type: CAZyme
Location: 14662 - 15378 (+)
Type: CAZyme
Location: 14662 - 15378 (+)
Gene ID: HRGMv2_2735_28_14
Type: pfam
Location: 15375 - 15743 (+)
Type: pfam
Location: 15375 - 15743 (+)
Gene ID: HRGMv2_2735_28_15
Type: TC
Location: 15840 - 17267 (+)
Type: TC
Location: 15840 - 17267 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
SFJ001
Species
SFJ001 sp004555865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.