Cluster: HRGMv2_2735_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2735
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2735_12 | HRGMv2_2735_12_19 | 19828 | 20865 | - | 2.A.98.1.4 |
| TF | HRGMv2_2735_12 | HRGMv2_2735_12_20 | 21038 | 21889 | + | HTH_1 |
| sulfatase | HRGMv2_2735_12 | HRGMv2_2735_12_21 | 21964 | 22695 | - | S1_9 |
| CAZyme | HRGMv2_2735_12 | HRGMv2_2735_12_22 | 22969 | 23958 | - | GT2 |
| pfam | HRGMv2_2735_12 | HRGMv2_2735_12_23 | 24005 | 25270 | - | MMR_HSR1 | GTP-bdg_N | GTP-bdg_M |
| TC | HRGMv2_2735_12 | HRGMv2_2735_12_24 | 25586 | 26035 | + | 9.A.11.1.1 |
Gene ID: HRGMv2_2735_12_19
Type: TC
Location: 19828 - 20865 (-)
Type: TC
Location: 19828 - 20865 (-)
Gene ID: HRGMv2_2735_12_20
Type: TF
Location: 21038 - 21889 (+)
Type: TF
Location: 21038 - 21889 (+)
Gene ID: HRGMv2_2735_12_21
Type: sulfatase
Location: 21964 - 22695 (-)
Type: sulfatase
Location: 21964 - 22695 (-)
Gene ID: HRGMv2_2735_12_22
Type: CAZyme
Location: 22969 - 23958 (-)
Type: CAZyme
Location: 22969 - 23958 (-)
Gene ID: HRGMv2_2735_12_23
Type: pfam
Location: 24005 - 25270 (-)
Type: pfam
Location: 24005 - 25270 (-)
Gene ID: HRGMv2_2735_12_24
Type: TC
Location: 25586 - 26035 (+)
Type: TC
Location: 25586 - 26035 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
SFJ001
Species
SFJ001 sp004555865
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.