Cluster: HRGMv2_2727_CGC5
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2727
- CGC Family ID: CGCFAM_03134
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_544 | 602353 | 603747 | - | 3.A.2.1.5 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_545 | 603767 | 604615 | - | 3.A.2.1.5 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_546 | 604634 | 606154 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_547 | 606203 | 606742 | - | OSCP |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_548 | 606739 | 607245 | - | ATP-synt_B |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_549 | 607285 | 607566 | - | 3.A.2.1.5 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_550 | 607608 | 608351 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_551 | 608355 | 608855 | - | ATP-synt_I |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_552 | 608873 | 609133 | - | ATPase_gene1 |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_553 | 609472 | 610890 | - | GT5 |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_554 | 611018 | 612145 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_555 | 612139 | 613332 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_556 | 613417 | 615684 | - | CBM48 | GH13_9 |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_557 | 615975 | 617039 | - | DUF348 | 3D | G5 |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_558 | 617672 | 618301 | + | GH25 |
Gene ID: HRGMv2_2727_1_544
Type: TC
Location: 602353 - 603747 (-)
Type: TC
Location: 602353 - 603747 (-)
Gene ID: HRGMv2_2727_1_545
Type: TC
Location: 603767 - 604615 (-)
Type: TC
Location: 603767 - 604615 (-)
Gene ID: HRGMv2_2727_1_546
Type: TC
Location: 604634 - 606154 (-)
Type: TC
Location: 604634 - 606154 (-)
Gene ID: HRGMv2_2727_1_547
Type: pfam
Location: 606203 - 606742 (-)
Type: pfam
Location: 606203 - 606742 (-)
Gene ID: HRGMv2_2727_1_548
Type: pfam
Location: 606739 - 607245 (-)
Type: pfam
Location: 606739 - 607245 (-)
Gene ID: HRGMv2_2727_1_549
Type: TC
Location: 607285 - 607566 (-)
Type: TC
Location: 607285 - 607566 (-)
Gene ID: HRGMv2_2727_1_550
Type: TC
Location: 607608 - 608351 (-)
Type: TC
Location: 607608 - 608351 (-)
Gene ID: HRGMv2_2727_1_551
Type: pfam
Location: 608355 - 608855 (-)
Type: pfam
Location: 608355 - 608855 (-)
Gene ID: HRGMv2_2727_1_552
Type: pfam
Location: 608873 - 609133 (-)
Type: pfam
Location: 608873 - 609133 (-)
Gene ID: HRGMv2_2727_1_553
Type: CAZyme
Location: 609472 - 610890 (-)
Type: CAZyme
Location: 609472 - 610890 (-)
Gene ID: HRGMv2_2727_1_554
Type: pfam
Location: 611018 - 612145 (-)
Type: pfam
Location: 611018 - 612145 (-)
Gene ID: HRGMv2_2727_1_555
Type: pfam
Location: 612139 - 613332 (-)
Type: pfam
Location: 612139 - 613332 (-)
Gene ID: HRGMv2_2727_1_556
Type: CAZyme
Location: 613417 - 615684 (-)
Type: CAZyme
Location: 613417 - 615684 (-)
Gene ID: HRGMv2_2727_1_557
Type: pfam
Location: 615975 - 617039 (-)
Type: pfam
Location: 615975 - 617039 (-)
Gene ID: HRGMv2_2727_1_558
Type: CAZyme
Location: 617672 - 618301 (+)
Type: CAZyme
Location: 617672 - 618301 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.