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Cluster: HRGMv2_2727_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_388 428263 429738 - GH32
STP HRGMv2_2727_1 HRGMv2_2727_1_389 429763 431436 - SBP_bac_1
TC HRGMv2_2727_1 HRGMv2_2727_1_390 431513 432418 - 3.A.1.1.10
TC HRGMv2_2727_1 HRGMv2_2727_1_391 432432 433379 - 3.A.1.1.10
TF HRGMv2_2727_1 HRGMv2_2727_1_392 433722 434777 + LacI
TC HRGMv2_2727_1 HRGMv2_2727_1_393 434795 435445 + 9.B.28.1.2
NULL(UNKNOWN) HRGMv2_2727_1 HRGMv2_2727_1_394 435408 436049 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2727_1 HRGMv2_2727_1_395 436093 437025 + PfkB
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_396 437029 438858 + GH13_4
pfam HRGMv2_2727_1 HRGMv2_2727_1_397 439065 439244 - Y1_Tnp
TC HRGMv2_2727_1 HRGMv2_2727_1_398 439506 439805 - 4.A.3.2.8
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_399 439863 441332 - GH1
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_400 441358 442455 - GH170
TC HRGMv2_2727_1 HRGMv2_2727_1_401 442601 443947 - 4.A.3.2.3
TC HRGMv2_2727_1 HRGMv2_2727_1_402 444048 444374 - 4.A.3.2.7
pfam HRGMv2_2727_1 HRGMv2_2727_1_403 444825 447551 - Sigma54_activat | PRD | PRD | EIIA-man
pfam HRGMv2_2727_1 HRGMv2_2727_1_404 447833 448618 - Resolvase | Recombinase
TC HRGMv2_2727_1 HRGMv2_2727_1_405 448749 450476 - 3.A.1.21.1
TC HRGMv2_2727_1 HRGMv2_2727_1_406 450480 452249 - 3.A.1.21.1
Gene ID: HRGMv2_2727_1_388
Type: CAZyme
Location: 428263 - 429738 (-)
Gene ID: HRGMv2_2727_1_389
Type: STP
Location: 429763 - 431436 (-)
Gene ID: HRGMv2_2727_1_390
Type: TC
Location: 431513 - 432418 (-)
Gene ID: HRGMv2_2727_1_391
Type: TC
Location: 432432 - 433379 (-)
Gene ID: HRGMv2_2727_1_392
Type: TF
Location: 433722 - 434777 (+)
Gene ID: HRGMv2_2727_1_393
Type: TC
Location: 434795 - 435445 (+)
Gene ID: HRGMv2_2727_1_394
Type:
Location: 435408 - 436049 (+)
Gene ID: HRGMv2_2727_1_395
Type: STP
Location: 436093 - 437025 (+)
Gene ID: HRGMv2_2727_1_396
Type: CAZyme
Location: 437029 - 438858 (+)
Gene ID: HRGMv2_2727_1_397
Type: pfam
Location: 439065 - 439244 (-)
Gene ID: HRGMv2_2727_1_398
Type: TC
Location: 439506 - 439805 (-)
Gene ID: HRGMv2_2727_1_399
Type: CAZyme
Location: 439863 - 441332 (-)
Gene ID: HRGMv2_2727_1_400
Type: CAZyme
Location: 441358 - 442455 (-)
Gene ID: HRGMv2_2727_1_401
Type: TC
Location: 442601 - 443947 (-)
Gene ID: HRGMv2_2727_1_402
Type: TC
Location: 444048 - 444374 (-)
Gene ID: HRGMv2_2727_1_403
Type: pfam
Location: 444825 - 447551 (-)
Gene ID: HRGMv2_2727_1_404
Type: pfam
Location: 447833 - 448618 (-)
Gene ID: HRGMv2_2727_1_405
Type: TC
Location: 448749 - 450476 (-)
Gene ID: HRGMv2_2727_1_406
Type: TC
Location: 450480 - 452249 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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