Cluster: HRGMv2_2727_CGC3
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2727
- CGC Family ID: CGCFAM_00063
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_299 | 329161 | 329799 | + | 2.A.115.2.12 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_300 | 330230 | 330889 | - | 9.B.28.1.2 |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_301 | 330905 | 332563 | - | GH13_31 |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_302 | 332576 | 334537 | - | GH31_1 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_303 | 334638 | 335513 | - | 3.A.1.1.9 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_304 | 335530 | 336432 | - | 3.A.1.1.9 |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_305 | 336451 | 338130 | - | 3.A.1.1.9 |
| TF | HRGMv2_2727_1 | HRGMv2_2727_1_306 | 338403 | 339467 | - | LacI |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_307 | 339762 | 342023 | - | GT35 |
| TF | HRGMv2_2727_1 | HRGMv2_2727_1_308 | 342153 | 343010 | + | HTH_AraC | HTH_AraC |
| TF | HRGMv2_2727_1 | HRGMv2_2727_1_309 | 343072 | 344097 | - | LacI |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_310 | 344385 | 346067 | + | 4.A.1.1.11 |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_311 | 346074 | 346892 | + | Exo_endo_phos |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_312 | 346904 | 348058 | + | GH77 |
Gene ID: HRGMv2_2727_1_299
Type: TC
Location: 329161 - 329799 (+)
Type: TC
Location: 329161 - 329799 (+)
Gene ID: HRGMv2_2727_1_300
Type: TC
Location: 330230 - 330889 (-)
Type: TC
Location: 330230 - 330889 (-)
Gene ID: HRGMv2_2727_1_301
Type: CAZyme
Location: 330905 - 332563 (-)
Type: CAZyme
Location: 330905 - 332563 (-)
Gene ID: HRGMv2_2727_1_302
Type: CAZyme
Location: 332576 - 334537 (-)
Type: CAZyme
Location: 332576 - 334537 (-)
Gene ID: HRGMv2_2727_1_303
Type: TC
Location: 334638 - 335513 (-)
Type: TC
Location: 334638 - 335513 (-)
Gene ID: HRGMv2_2727_1_304
Type: TC
Location: 335530 - 336432 (-)
Type: TC
Location: 335530 - 336432 (-)
Gene ID: HRGMv2_2727_1_305
Type: TC
Location: 336451 - 338130 (-)
Type: TC
Location: 336451 - 338130 (-)
Gene ID: HRGMv2_2727_1_306
Type: TF
Location: 338403 - 339467 (-)
Type: TF
Location: 338403 - 339467 (-)
Gene ID: HRGMv2_2727_1_307
Type: CAZyme
Location: 339762 - 342023 (-)
Type: CAZyme
Location: 339762 - 342023 (-)
Gene ID: HRGMv2_2727_1_308
Type: TF
Location: 342153 - 343010 (+)
Type: TF
Location: 342153 - 343010 (+)
Gene ID: HRGMv2_2727_1_309
Type: TF
Location: 343072 - 344097 (-)
Type: TF
Location: 343072 - 344097 (-)
Gene ID: HRGMv2_2727_1_310
Type: TC
Location: 344385 - 346067 (+)
Type: TC
Location: 344385 - 346067 (+)
Gene ID: HRGMv2_2727_1_311
Type: pfam
Location: 346074 - 346892 (+)
Type: pfam
Location: 346074 - 346892 (+)
Gene ID: HRGMv2_2727_1_312
Type: CAZyme
Location: 346904 - 348058 (+)
Type: CAZyme
Location: 346904 - 348058 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.