Cluster: HRGMv2_2727_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2727
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2727_3 | HRGMv2_2727_3_391 | 430924 | 432225 | - | 9.A.40.2.4 |
| TC | HRGMv2_2727_3 | HRGMv2_2727_3_392 | 432451 | 435063 | - | 3.A.9.1.2 |
| pfam | HRGMv2_2727_3 | HRGMv2_2727_3_393 | 435292 | 436161 | - | SAICAR_synt |
| CAZyme | HRGMv2_2727_3 | HRGMv2_2727_3_394 | 436501 | 437934 | + | GH1 |
| sulfatase | HRGMv2_2727_3 | HRGMv2_2727_3_395 | 437915 | 438886 | + | S1_15 |
| TF | HRGMv2_2727_3 | HRGMv2_2727_3_396 | 439078 | 439557 | + | MarR |
| TC | HRGMv2_2727_3 | HRGMv2_2727_3_397 | 439693 | 441444 | + | 3.A.1.135.5 |
| TC | HRGMv2_2727_3 | HRGMv2_2727_3_398 | 441444 | 443366 | + | 3.A.1.135.5 |
| pfam | HRGMv2_2727_3 | HRGMv2_2727_3_399 | 443421 | 444899 | - | Mur_ligase_C | Mur_ligase_M |
| pfam | HRGMv2_2727_3 | HRGMv2_2727_3_400 | 444917 | 446485 | - | POTRA_1 |
| CAZyme | HRGMv2_2727_3 | HRGMv2_2727_3_401 | 446523 | 447650 | - | GT28 |
| TC | HRGMv2_2727_3 | HRGMv2_2727_3_402 | 447663 | 448955 | - | 2.A.103.1.3 |
Gene ID: HRGMv2_2727_3_391
Type: TC
Location: 430924 - 432225 (-)
Type: TC
Location: 430924 - 432225 (-)
Gene ID: HRGMv2_2727_3_392
Type: TC
Location: 432451 - 435063 (-)
Type: TC
Location: 432451 - 435063 (-)
Gene ID: HRGMv2_2727_3_393
Type: pfam
Location: 435292 - 436161 (-)
Type: pfam
Location: 435292 - 436161 (-)
Gene ID: HRGMv2_2727_3_394
Type: CAZyme
Location: 436501 - 437934 (+)
Type: CAZyme
Location: 436501 - 437934 (+)
Gene ID: HRGMv2_2727_3_395
Type: sulfatase
Location: 437915 - 438886 (+)
Type: sulfatase
Location: 437915 - 438886 (+)
Gene ID: HRGMv2_2727_3_396
Type: TF
Location: 439078 - 439557 (+)
Type: TF
Location: 439078 - 439557 (+)
Gene ID: HRGMv2_2727_3_397
Type: TC
Location: 439693 - 441444 (+)
Type: TC
Location: 439693 - 441444 (+)
Gene ID: HRGMv2_2727_3_398
Type: TC
Location: 441444 - 443366 (+)
Type: TC
Location: 441444 - 443366 (+)
Gene ID: HRGMv2_2727_3_399
Type: pfam
Location: 443421 - 444899 (-)
Type: pfam
Location: 443421 - 444899 (-)
Gene ID: HRGMv2_2727_3_400
Type: pfam
Location: 444917 - 446485 (-)
Type: pfam
Location: 444917 - 446485 (-)
Gene ID: HRGMv2_2727_3_401
Type: CAZyme
Location: 446523 - 447650 (-)
Type: CAZyme
Location: 446523 - 447650 (-)
Gene ID: HRGMv2_2727_3_402
Type: TC
Location: 447663 - 448955 (-)
Type: TC
Location: 447663 - 448955 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.