Cluster: HRGMv2_2727_CGC19
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 8
- Substrate: beta-mannan
- Genome ID: HRGMv2_2727
- CGC Family ID: CGCFAM_00226
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1152 | 1210229 | 1211020 | - | GT2 |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1153 | 1211126 | 1213564 | - | GT2 | GT2 |
| pfam | HRGMv2_2727_2 | HRGMv2_2727_2_1154 | 1213693 | 1214754 | - | SpoIID |
| pfam | HRGMv2_2727_2 | HRGMv2_2727_2_1155 | 1215051 | 1216583 | - | Resolvase | Recombinase | Zn_ribbon_recom |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1156 | 1216777 | 1217859 | - | CBM35inCE17 | CE17 |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1157 | 1217856 | 1218785 | - | GH113 |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1158 | 1219059 | 1220171 | + | CE2 |
| TF | HRGMv2_2727_2 | HRGMv2_2727_2_1159 | 1220333 | 1221319 | - | LacI |
| STP | HRGMv2_2727_2 | HRGMv2_2727_2_1160 | 1221730 | 1223142 | + | SBP_bac_1 |
| TC | HRGMv2_2727_2 | HRGMv2_2727_2_1161 | 1223214 | 1224161 | + | 3.A.1.1.28 |
| TC | HRGMv2_2727_2 | HRGMv2_2727_2_1162 | 1224178 | 1225032 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1163 | 1225150 | 1226169 | + | GH130_2 |
| pfam | HRGMv2_2727_2 | HRGMv2_2727_2_1164 | 1226310 | 1227491 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1165 | 1227478 | 1228668 | + | GH130_1 |
| TC | HRGMv2_2727_2 | HRGMv2_2727_2_1166 | 1228706 | 1229386 | + | 9.B.28.1.2 |
| CAZyme | HRGMv2_2727_2 | HRGMv2_2727_2_1167 | 1229383 | 1231548 | + | GH36 |
Gene ID: HRGMv2_2727_2_1152
Type: CAZyme
Location: 1210229 - 1211020 (-)
Type: CAZyme
Location: 1210229 - 1211020 (-)
Gene ID: HRGMv2_2727_2_1153
Type: CAZyme
Location: 1211126 - 1213564 (-)
Type: CAZyme
Location: 1211126 - 1213564 (-)
Gene ID: HRGMv2_2727_2_1154
Type: pfam
Location: 1213693 - 1214754 (-)
Type: pfam
Location: 1213693 - 1214754 (-)
Gene ID: HRGMv2_2727_2_1155
Type: pfam
Location: 1215051 - 1216583 (-)
Type: pfam
Location: 1215051 - 1216583 (-)
Gene ID: HRGMv2_2727_2_1156
Type: CAZyme
Location: 1216777 - 1217859 (-)
Type: CAZyme
Location: 1216777 - 1217859 (-)
Gene ID: HRGMv2_2727_2_1157
Type: CAZyme
Location: 1217856 - 1218785 (-)
Type: CAZyme
Location: 1217856 - 1218785 (-)
Gene ID: HRGMv2_2727_2_1158
Type: CAZyme
Location: 1219059 - 1220171 (+)
Type: CAZyme
Location: 1219059 - 1220171 (+)
Gene ID: HRGMv2_2727_2_1159
Type: TF
Location: 1220333 - 1221319 (-)
Type: TF
Location: 1220333 - 1221319 (-)
Gene ID: HRGMv2_2727_2_1160
Type: STP
Location: 1221730 - 1223142 (+)
Type: STP
Location: 1221730 - 1223142 (+)
Gene ID: HRGMv2_2727_2_1161
Type: TC
Location: 1223214 - 1224161 (+)
Type: TC
Location: 1223214 - 1224161 (+)
Gene ID: HRGMv2_2727_2_1162
Type: TC
Location: 1224178 - 1225032 (+)
Type: TC
Location: 1224178 - 1225032 (+)
Gene ID: HRGMv2_2727_2_1163
Type: CAZyme
Location: 1225150 - 1226169 (+)
Type: CAZyme
Location: 1225150 - 1226169 (+)
Gene ID: HRGMv2_2727_2_1164
Type: pfam
Location: 1226310 - 1227491 (+)
Type: pfam
Location: 1226310 - 1227491 (+)
Gene ID: HRGMv2_2727_2_1165
Type: CAZyme
Location: 1227478 - 1228668 (+)
Type: CAZyme
Location: 1227478 - 1228668 (+)
Gene ID: HRGMv2_2727_2_1166
Type: TC
Location: 1228706 - 1229386 (+)
Type: TC
Location: 1228706 - 1229386 (+)
Gene ID: HRGMv2_2727_2_1167
Type: CAZyme
Location: 1229383 - 1231548 (+)
Type: CAZyme
Location: 1229383 - 1231548 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.