Cluster: HRGMv2_2727_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2727
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_878 | 988907 | 990319 | + | 2.A.2.3.3 |
| CAZyme | HRGMv2_2727_1 | HRGMv2_2727_1_879 | 990316 | 992787 | + | GH2 |
| pfam | HRGMv2_2727_1 | HRGMv2_2727_1_880 | 992984 | 993232 | - | DUF6061 |
| STP | HRGMv2_2727_1 | HRGMv2_2727_1_881 | 994030 | 994392 | + | PfkB |
| TC | HRGMv2_2727_1 | HRGMv2_2727_1_882 | 994660 | 996261 | - | 3.A.1.135.7 |
Gene ID: HRGMv2_2727_1_878
Type: TC
Location: 988907 - 990319 (+)
Type: TC
Location: 988907 - 990319 (+)
Gene ID: HRGMv2_2727_1_879
Type: CAZyme
Location: 990316 - 992787 (+)
Type: CAZyme
Location: 990316 - 992787 (+)
Gene ID: HRGMv2_2727_1_880
Type: pfam
Location: 992984 - 993232 (-)
Type: pfam
Location: 992984 - 993232 (-)
Gene ID: HRGMv2_2727_1_881
Type: STP
Location: 994030 - 994392 (+)
Type: STP
Location: 994030 - 994392 (+)
Gene ID: HRGMv2_2727_1_882
Type: TC
Location: 994660 - 996261 (-)
Type: TC
Location: 994660 - 996261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2727_1_878 | vegan > omnivore | 1.18323 | 0.00897 |
| HRGMv2_2727_1_878 | vegetarian > omnivore | 1.36350 | 0.02839 |
| HRGMv2_2727_1_879 | vegan > omnivore | 1.11429 | 0.00897 |
| HRGMv2_2727_1_879 | vegetarian > omnivore | 1.37525 | 0.02223 |
| HRGMv2_2727_1_882 | vegan > omnivore | 2.47074 | 0.00897 |