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Cluster: HRGMv2_2727_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_1 188 1300 + CE2
TF HRGMv2_2727_1 HRGMv2_2727_1_2 1462 2448 - LacI
STP HRGMv2_2727_1 HRGMv2_2727_1_3 2859 4271 + SBP_bac_1
TC HRGMv2_2727_1 HRGMv2_2727_1_4 4343 5290 + 3.A.1.1.28
TC HRGMv2_2727_1 HRGMv2_2727_1_5 5307 6161 + 3.A.1.1.34
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_6 6279 7298 + GH130_2
pfam HRGMv2_2727_1 HRGMv2_2727_1_7 7439 8620 + GlcNAc_2-epim
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_8 8607 9797 + GH130_1
TC HRGMv2_2727_1 HRGMv2_2727_1_9 9835 10515 + 9.B.28.1.2
CAZyme HRGMv2_2727_1 HRGMv2_2727_1_10 10512 12677 + GH36
Gene ID: HRGMv2_2727_1_1
Type: CAZyme
Location: 188 - 1300 (+)
Gene ID: HRGMv2_2727_1_2
Type: TF
Location: 1462 - 2448 (-)
Gene ID: HRGMv2_2727_1_3
Type: STP
Location: 2859 - 4271 (+)
Gene ID: HRGMv2_2727_1_4
Type: TC
Location: 4343 - 5290 (+)
Gene ID: HRGMv2_2727_1_5
Type: TC
Location: 5307 - 6161 (+)
Gene ID: HRGMv2_2727_1_6
Type: CAZyme
Location: 6279 - 7298 (+)
Gene ID: HRGMv2_2727_1_7
Type: pfam
Location: 7439 - 8620 (+)
Gene ID: HRGMv2_2727_1_8
Type: CAZyme
Location: 8607 - 9797 (+)
Gene ID: HRGMv2_2727_1_9
Type: TC
Location: 9835 - 10515 (+)
Gene ID: HRGMv2_2727_1_10
Type: CAZyme
Location: 10512 - 12677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2727_1_2 vegetarian > vegan 1.01360 0.02258

🧭 Explore Read Mapping of CGC

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