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Cluster: HRGMv2_2723_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2723_11 HRGMv2_2723_11_26 28508 29551 - 3.A.1.11.2
pfam HRGMv2_2723_11 HRGMv2_2723_11_27 29567 30370 - BPD_transp_1
pfam HRGMv2_2723_11 HRGMv2_2723_11_28 30367 31251 - BPD_transp_1
TC HRGMv2_2723_11 HRGMv2_2723_11_29 31251 32495 - 3.A.1.19.4
pfam HRGMv2_2723_11 HRGMv2_2723_11_30 32531 33502 - CCG
CAZyme HRGMv2_2723_11 HRGMv2_2723_11_31 33521 34198 - GT2
pfam HRGMv2_2723_11 HRGMv2_2723_11_32 34212 35204 - Choline_kinase | APH
pfam HRGMv2_2723_11 HRGMv2_2723_11_33 35222 35887 - CofC | DUF2064
TC HRGMv2_2723_11 HRGMv2_2723_11_34 35904 36623 - 9.B.27.1.1
TC HRGMv2_2723_11 HRGMv2_2723_11_35 36634 37350 - 9.B.27.1.2
Gene ID: HRGMv2_2723_11_26
Type: TC
Location: 28508 - 29551 (-)
Gene ID: HRGMv2_2723_11_27
Type: pfam
Location: 29567 - 30370 (-)
Gene ID: HRGMv2_2723_11_28
Type: pfam
Location: 30367 - 31251 (-)
Gene ID: HRGMv2_2723_11_29
Type: TC
Location: 31251 - 32495 (-)
Gene ID: HRGMv2_2723_11_30
Type: pfam
Location: 32531 - 33502 (-)
Gene ID: HRGMv2_2723_11_31
Type: CAZyme
Location: 33521 - 34198 (-)
Gene ID: HRGMv2_2723_11_32
Type: pfam
Location: 34212 - 35204 (-)
Gene ID: HRGMv2_2723_11_33
Type: pfam
Location: 35222 - 35887 (-)
Gene ID: HRGMv2_2723_11_34
Type: TC
Location: 35904 - 36623 (-)
Gene ID: HRGMv2_2723_11_35
Type: TC
Location: 36634 - 37350 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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