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Cluster: HRGMv2_2720_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2720_17 HRGMv2_2720_17_15 15119 17044 + 9.B.18.2.1
TC HRGMv2_2720_17 HRGMv2_2720_17_16 17117 18112 - 8.A.5.1.6
pfam HRGMv2_2720_17 HRGMv2_2720_17_17 18271 19821 + CotH
TC HRGMv2_2720_17 HRGMv2_2720_17_18 19931 21295 + 2.A.40.7.4
pfam HRGMv2_2720_17 HRGMv2_2720_17_19 21308 22102 + Ubie_methyltran | Methyltransf_8 | MetW | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_2720_17 HRGMv2_2720_17_20 22141 23196 - CE2
pfam HRGMv2_2720_17 HRGMv2_2720_17_21 23300 24466 - ABC2_membrane_3
pfam HRGMv2_2720_17 HRGMv2_2720_17_22 24453 25574 - ABC2_membrane_3
TC HRGMv2_2720_17 HRGMv2_2720_17_23 25579 26526 - 3.A.1.105.9
Gene ID: HRGMv2_2720_17_15
Type: TC
Location: 15119 - 17044 (+)
Gene ID: HRGMv2_2720_17_16
Type: TC
Location: 17117 - 18112 (-)
Gene ID: HRGMv2_2720_17_17
Type: pfam
Location: 18271 - 19821 (+)
Gene ID: HRGMv2_2720_17_18
Type: TC
Location: 19931 - 21295 (+)
Gene ID: HRGMv2_2720_17_19
Type: pfam
Location: 21308 - 22102 (+)
Gene ID: HRGMv2_2720_17_20
Type: CAZyme
Location: 22141 - 23196 (-)
Gene ID: HRGMv2_2720_17_21
Type: pfam
Location: 23300 - 24466 (-)
Gene ID: HRGMv2_2720_17_22
Type: pfam
Location: 24453 - 25574 (-)
Gene ID: HRGMv2_2720_17_23
Type: TC
Location: 25579 - 26526 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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