Cluster: HRGMv2_2712_CGC9
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2712
- CGC Family ID: CGCFAM_00076
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2712_1 | HRGMv2_2712_1_1488 | 1620779 | 1622218 | + | 8.A.3.3.4 |
| TC | HRGMv2_2712_1 | HRGMv2_2712_1_1489 | 1622215 | 1623645 | + | 8.A.3.3.4 |
| TC | HRGMv2_2712_1 | HRGMv2_2712_1_1490 | 1623669 | 1625561 | + | 9.B.18.2.1 |
| pfam | HRGMv2_2712_1 | HRGMv2_2712_1_1491 | 1625574 | 1626692 | + | DegT_DnrJ_EryC1 |
| TC | HRGMv2_2712_1 | HRGMv2_2712_1_1492 | 1626705 | 1627334 | + | 9.B.18.1.2 |
| pfam | HRGMv2_2712_1 | HRGMv2_2712_1_1493 | 1627327 | 1627941 | + | PglD_N |
| CAZyme | HRGMv2_2712_1 | HRGMv2_2712_1_1494 | 1627910 | 1629022 | + | GT4 |
| CAZyme | HRGMv2_2712_1 | HRGMv2_2712_1_1495 | 1629032 | 1630225 | + | GT4 |
| CAZyme | HRGMv2_2712_1 | HRGMv2_2712_1_1496 | 1630222 | 1631337 | + | GT4 |
Gene ID: HRGMv2_2712_1_1488
Type: TC
Location: 1620779 - 1622218 (+)
Type: TC
Location: 1620779 - 1622218 (+)
Gene ID: HRGMv2_2712_1_1489
Type: TC
Location: 1622215 - 1623645 (+)
Type: TC
Location: 1622215 - 1623645 (+)
Gene ID: HRGMv2_2712_1_1490
Type: TC
Location: 1623669 - 1625561 (+)
Type: TC
Location: 1623669 - 1625561 (+)
Gene ID: HRGMv2_2712_1_1491
Type: pfam
Location: 1625574 - 1626692 (+)
Type: pfam
Location: 1625574 - 1626692 (+)
Gene ID: HRGMv2_2712_1_1492
Type: TC
Location: 1626705 - 1627334 (+)
Type: TC
Location: 1626705 - 1627334 (+)
Gene ID: HRGMv2_2712_1_1493
Type: pfam
Location: 1627327 - 1627941 (+)
Type: pfam
Location: 1627327 - 1627941 (+)
Gene ID: HRGMv2_2712_1_1494
Type: CAZyme
Location: 1627910 - 1629022 (+)
Type: CAZyme
Location: 1627910 - 1629022 (+)
Gene ID: HRGMv2_2712_1_1495
Type: CAZyme
Location: 1629032 - 1630225 (+)
Type: CAZyme
Location: 1629032 - 1630225 (+)
Gene ID: HRGMv2_2712_1_1496
Type: CAZyme
Location: 1630222 - 1631337 (+)
Type: CAZyme
Location: 1630222 - 1631337 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
CAG-103
Species
CAG-103 sp934589185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2712_1_1489 | vegetarian > omnivore | 1.33063 | 0.00007 |
| HRGMv2_2712_1_1491 | vegetarian > vegan | 1.28819 | 0.00170 |
| HRGMv2_2712_1_1492 | vegetarian > vegan | 1.77751 | 0.00170 |
| HRGMv2_2712_1_1493 | vegetarian > omnivore | 1.21929 | 0.00007 |
| HRGMv2_2712_1_1493 | vegetarian > vegan | 4.52717 | 0.00170 |
| HRGMv2_2712_1_1494 | vegetarian > vegan | 2.15104 | 0.00170 |
| HRGMv2_2712_1_1495 | vegetarian > omnivore | 1.34617 | 0.00007 |
| HRGMv2_2712_1_1495 | vegetarian > vegan | 1.14316 | 0.00170 |
| HRGMv2_2712_1_1496 | vegetarian > omnivore | 3.49727 | 0.00007 |
| HRGMv2_2712_1_1496 | vegetarian > vegan | 2.03195 | 0.00170 |