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Cluster: HRGMv2_2712_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2712_1 HRGMv2_2712_1_1873 2057356 2057763 + 3.B.1.1.1
TC HRGMv2_2712_1 HRGMv2_2712_1_1874 2057779 2058933 + 3.B.1.1.3
pfam HRGMv2_2712_1 HRGMv2_2712_1_1875 2059032 2060243 + CoA_transf_3
TC HRGMv2_2712_1 HRGMv2_2712_1_1876 2060284 2062047 + 3.B.1.1.3
TC HRGMv2_2712_1 HRGMv2_2712_1_1877 2062321 2063667 + 2.A.22.5.2
CAZyme HRGMv2_2712_1 HRGMv2_2712_1_1878 2063722 2065260 - GH25
Gene ID: HRGMv2_2712_1_1873
Type: TC
Location: 2057356 - 2057763 (+)
Gene ID: HRGMv2_2712_1_1874
Type: TC
Location: 2057779 - 2058933 (+)
Gene ID: HRGMv2_2712_1_1875
Type: pfam
Location: 2059032 - 2060243 (+)
Gene ID: HRGMv2_2712_1_1876
Type: TC
Location: 2060284 - 2062047 (+)
Gene ID: HRGMv2_2712_1_1877
Type: TC
Location: 2062321 - 2063667 (+)
Gene ID: HRGMv2_2712_1_1878
Type: CAZyme
Location: 2063722 - 2065260 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2712_1_1875 vegetarian > omnivore 3.93993 0.00007
HRGMv2_2712_1_1875 vegetarian > vegan 5.26344 0.00170
HRGMv2_2712_1_1876 vegetarian > vegan 1.54237 0.00170
HRGMv2_2712_1_1878 vegetarian > omnivore 2.05484 0.00007

🧭 Explore Read Mapping of CGC

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