Cluster: HRGMv2_2704_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2704
- CGC Family ID: CGCFAM_00087
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2704_10 | HRGMv2_2704_10_7 | 6105 | 6911 | - | 3.A.1.26.7 |
| TC | HRGMv2_2704_10 | HRGMv2_2704_10_8 | 6905 | 7813 | - | 3.A.1.25.6 |
| TC | HRGMv2_2704_10 | HRGMv2_2704_10_9 | 7776 | 8630 | - | 3.A.1.26.7 |
| NULL(UNKNOWN) | HRGMv2_2704_10 | HRGMv2_2704_10_10 | 8657 | 8950 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2704_10 | HRGMv2_2704_10_11 | 8997 | 9860 | - | Cons_hypoth95 | Methyltransf_15 | Methyltrans_SAM |
| CAZyme | HRGMv2_2704_10 | HRGMv2_2704_10_12 | 10115 | 11392 | + | GT2 |
Gene ID: HRGMv2_2704_10_7
Type: TC
Location: 6105 - 6911 (-)
Type: TC
Location: 6105 - 6911 (-)
Gene ID: HRGMv2_2704_10_8
Type: TC
Location: 6905 - 7813 (-)
Type: TC
Location: 6905 - 7813 (-)
Gene ID: HRGMv2_2704_10_9
Type: TC
Location: 7776 - 8630 (-)
Type: TC
Location: 7776 - 8630 (-)
Gene ID: HRGMv2_2704_10_10
Type:
Location: 8657 - 8950 (-)
Type:
Location: 8657 - 8950 (-)
Gene ID: HRGMv2_2704_10_11
Type: pfam
Location: 8997 - 9860 (-)
Type: pfam
Location: 8997 - 9860 (-)
Gene ID: HRGMv2_2704_10_12
Type: CAZyme
Location: 10115 - 11392 (+)
Type: CAZyme
Location: 10115 - 11392 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.