Cluster: HRGMv2_2683_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2683
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2683_5 | HRGMv2_2683_5_34 | 40774 | 41703 | + | 3.A.1.1.11 |
| TC | HRGMv2_2683_5 | HRGMv2_2683_5_35 | 41714 | 42571 | + | 3.A.1.1.11 |
| TF | HRGMv2_2683_5 | HRGMv2_2683_5_36 | 42655 | 43473 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2683_5 | HRGMv2_2683_5_37 | 43585 | 45141 | + | GH28 |
| CAZyme | HRGMv2_2683_5 | HRGMv2_2683_5_38 | 45145 | 46290 | + | GH105 |
Gene ID: HRGMv2_2683_5_34
Type: TC
Location: 40774 - 41703 (+)
Type: TC
Location: 40774 - 41703 (+)
Gene ID: HRGMv2_2683_5_35
Type: TC
Location: 41714 - 42571 (+)
Type: TC
Location: 41714 - 42571 (+)
Gene ID: HRGMv2_2683_5_36
Type: TF
Location: 42655 - 43473 (-)
Type: TF
Location: 42655 - 43473 (-)
Gene ID: HRGMv2_2683_5_37
Type: CAZyme
Location: 43585 - 45141 (+)
Type: CAZyme
Location: 43585 - 45141 (+)
Gene ID: HRGMv2_2683_5_38
Type: CAZyme
Location: 45145 - 46290 (+)
Type: CAZyme
Location: 45145 - 46290 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934503275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.