Cluster: HRGMv2_2683_CGC18
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2683
- CGC Family ID: CGCFAM_00688
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2683_55 | HRGMv2_2683_55_3 | 1332 | 2582 | - | 9.B.10.1.1 |
| peptidase | HRGMv2_2683_55 | HRGMv2_2683_55_4 | 2841 | 4640 | + | M24.UPB |
| TF | HRGMv2_2683_55 | HRGMv2_2683_55_5 | 4777 | 5496 | + | LytTR |
| CAZyme | HRGMv2_2683_55 | HRGMv2_2683_55_6 | 5548 | 6570 | - | GT2 |
| pfam | HRGMv2_2683_55 | HRGMv2_2683_55_7 | 6675 | 7325 | - | Hydrolase | HAD | HAD_2 |
| pfam | HRGMv2_2683_55 | HRGMv2_2683_55_8 | 7505 | 8686 | + | Patatin |
| TC | HRGMv2_2683_55 | HRGMv2_2683_55_9 | 8673 | 10304 | + | 8.A.7.1.5 |
Gene ID: HRGMv2_2683_55_3
Type: TC
Location: 1332 - 2582 (-)
Type: TC
Location: 1332 - 2582 (-)
Gene ID: HRGMv2_2683_55_4
Type: peptidase
Location: 2841 - 4640 (+)
Type: peptidase
Location: 2841 - 4640 (+)
Gene ID: HRGMv2_2683_55_5
Type: TF
Location: 4777 - 5496 (+)
Type: TF
Location: 4777 - 5496 (+)
Gene ID: HRGMv2_2683_55_6
Type: CAZyme
Location: 5548 - 6570 (-)
Type: CAZyme
Location: 5548 - 6570 (-)
Gene ID: HRGMv2_2683_55_7
Type: pfam
Location: 6675 - 7325 (-)
Type: pfam
Location: 6675 - 7325 (-)
Gene ID: HRGMv2_2683_55_8
Type: pfam
Location: 7505 - 8686 (+)
Type: pfam
Location: 7505 - 8686 (+)
Gene ID: HRGMv2_2683_55_9
Type: TC
Location: 8673 - 10304 (+)
Type: TC
Location: 8673 - 10304 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp934503275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.