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Cluster: HRGMv2_2681_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2681_3 HRGMv2_2681_3_97 114583 116565 + GH42
TF HRGMv2_2681_3 HRGMv2_2681_3_98 116706 117737 + LacI
pfam HRGMv2_2681_3 HRGMv2_2681_3_99 118016 119296 + SBP_bac_1 | SBP_bac_8
TC HRGMv2_2681_3 HRGMv2_2681_3_100 119416 120864 + 3.A.1.1.27
TC HRGMv2_2681_3 HRGMv2_2681_3_101 120861 121769 + 3.A.1.1.27
CAZyme HRGMv2_2681_3 HRGMv2_2681_3_102 122427 124898 - GH2
TC HRGMv2_2681_3 HRGMv2_2681_3_103 124895 126307 - 2.A.2.3.3
Gene ID: HRGMv2_2681_3_97
Type: CAZyme
Location: 114583 - 116565 (+)
Gene ID: HRGMv2_2681_3_98
Type: TF
Location: 116706 - 117737 (+)
Gene ID: HRGMv2_2681_3_99
Type: pfam
Location: 118016 - 119296 (+)
Gene ID: HRGMv2_2681_3_100
Type: TC
Location: 119416 - 120864 (+)
Gene ID: HRGMv2_2681_3_101
Type: TC
Location: 120861 - 121769 (+)
Gene ID: HRGMv2_2681_3_102
Type: CAZyme
Location: 122427 - 124898 (-)
Gene ID: HRGMv2_2681_3_103
Type: TC
Location: 124895 - 126307 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2681_3_102 vegan > omnivore 1.04922 0.04649
HRGMv2_2681_3_102 vegetarian > omnivore 1.26928 0.02695
HRGMv2_2681_3_103 vegan > omnivore 1.14248 0.04492
HRGMv2_2681_3_103 vegetarian > omnivore 1.28927 0.03060

🧭 Explore Read Mapping of CGC

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