dbCAN Logo

Cluster: HRGMv2_2681_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2681_2 HRGMv2_2681_2_10 11629 12144 - 3.A.1.26.5
CAZyme HRGMv2_2681_2 HRGMv2_2681_2_11 12949 15384 - GH94
TF HRGMv2_2681_2 HRGMv2_2681_2_12 15913 16920 + LacI
NULL(UNKNOWN) HRGMv2_2681_2 HRGMv2_2681_2_13 17000 18442 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2681_2 HRGMv2_2681_2_14 18542 19519 + 3.A.1.1.4
TC HRGMv2_2681_2 HRGMv2_2681_2_15 19522 20388 + 3.A.1.1.48
pfam HRGMv2_2681_2 HRGMv2_2681_2_16 20871 21281 - Pep_deformylase
TC HRGMv2_2681_2 HRGMv2_2681_2_17 21295 22581 - 2.A.26.1.2
pfam HRGMv2_2681_2 HRGMv2_2681_2_18 22793 23563 + BPD_transp_1
TC HRGMv2_2681_2 HRGMv2_2681_2_19 23557 24138 + 3.A.1.19.1
TC HRGMv2_2681_2 HRGMv2_2681_2_20 24193 25410 - 2.A.103.1.7
Gene ID: HRGMv2_2681_2_10
Type: TC
Location: 11629 - 12144 (-)
Gene ID: HRGMv2_2681_2_11
Type: CAZyme
Location: 12949 - 15384 (-)
Gene ID: HRGMv2_2681_2_12
Type: TF
Location: 15913 - 16920 (+)
Gene ID: HRGMv2_2681_2_13
Type:
Location: 17000 - 18442 (+)
Gene ID: HRGMv2_2681_2_14
Type: TC
Location: 18542 - 19519 (+)
Gene ID: HRGMv2_2681_2_15
Type: TC
Location: 19522 - 20388 (+)
Gene ID: HRGMv2_2681_2_16
Type: pfam
Location: 20871 - 21281 (-)
Gene ID: HRGMv2_2681_2_17
Type: TC
Location: 21295 - 22581 (-)
Gene ID: HRGMv2_2681_2_18
Type: pfam
Location: 22793 - 23563 (+)
Gene ID: HRGMv2_2681_2_19
Type: TC
Location: 23557 - 24138 (+)
Gene ID: HRGMv2_2681_2_20
Type: TC
Location: 24193 - 25410 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List