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Cluster: HRGMv2_2681_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2681_1 HRGMv2_2681_1_224 245998 248052 - 3.A.3.32.3
pfam HRGMv2_2681_1 HRGMv2_2681_1_225 248151 248441 - DUF6110
CAZyme HRGMv2_2681_1 HRGMv2_2681_1_226 248908 251169 - GT35
TF HRGMv2_2681_1 HRGMv2_2681_1_227 251299 252156 + HTH_AraC | HTH_AraC
STP HRGMv2_2681_1 HRGMv2_2681_1_228 252223 252711 - Peripla_BP_3
TC HRGMv2_2681_1 HRGMv2_2681_1_229 252786 254324 + 4.A.1.1.11
pfam HRGMv2_2681_1 HRGMv2_2681_1_230 254331 255149 + Exo_endo_phos
CAZyme HRGMv2_2681_1 HRGMv2_2681_1_231 255166 256668 + GH77
TC HRGMv2_2681_1 HRGMv2_2681_1_232 256781 257488 - 2.A.122.1.6
TC HRGMv2_2681_1 HRGMv2_2681_1_233 257481 257873 - 1.E.14.1.17
Gene ID: HRGMv2_2681_1_224
Type: TC
Location: 245998 - 248052 (-)
Gene ID: HRGMv2_2681_1_225
Type: pfam
Location: 248151 - 248441 (-)
Gene ID: HRGMv2_2681_1_226
Type: CAZyme
Location: 248908 - 251169 (-)
Gene ID: HRGMv2_2681_1_227
Type: TF
Location: 251299 - 252156 (+)
Gene ID: HRGMv2_2681_1_228
Type: STP
Location: 252223 - 252711 (-)
Gene ID: HRGMv2_2681_1_229
Type: TC
Location: 252786 - 254324 (+)
Gene ID: HRGMv2_2681_1_230
Type: pfam
Location: 254331 - 255149 (+)
Gene ID: HRGMv2_2681_1_231
Type: CAZyme
Location: 255166 - 256668 (+)
Gene ID: HRGMv2_2681_1_232
Type: TC
Location: 256781 - 257488 (-)
Gene ID: HRGMv2_2681_1_233
Type: TC
Location: 257481 - 257873 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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