Cluster: HRGMv2_2681_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2681
- CGC Family ID: CGCFAM_00160
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2681_26 | HRGMv2_2681_26_11 | 8931 | 9587 | - | 9.A.32.1.1 |
| TF | HRGMv2_2681_26 | HRGMv2_2681_26_12 | 10410 | 11138 | - | GntR |
| TC | HRGMv2_2681_26 | HRGMv2_2681_26_13 | 11367 | 12782 | + | 4.A.1.2.13 |
| CAZyme | HRGMv2_2681_26 | HRGMv2_2681_26_14 | 12809 | 14440 | + | GH13_29 |
| pfam | HRGMv2_2681_26 | HRGMv2_2681_26_15 | 15111 | 15845 | - | ABC2_membrane_4 |
| pfam | HRGMv2_2681_26 | HRGMv2_2681_26_16 | 15850 | 16599 | - | ABC2_membrane_4 |
| TC | HRGMv2_2681_26 | HRGMv2_2681_26_17 | 16601 | 17527 | - | 3.A.1.124.3 |
Gene ID: HRGMv2_2681_26_11
Type: TC
Location: 8931 - 9587 (-)
Type: TC
Location: 8931 - 9587 (-)
Gene ID: HRGMv2_2681_26_12
Type: TF
Location: 10410 - 11138 (-)
Type: TF
Location: 10410 - 11138 (-)
Gene ID: HRGMv2_2681_26_13
Type: TC
Location: 11367 - 12782 (+)
Type: TC
Location: 11367 - 12782 (+)
Gene ID: HRGMv2_2681_26_14
Type: CAZyme
Location: 12809 - 14440 (+)
Type: CAZyme
Location: 12809 - 14440 (+)
Gene ID: HRGMv2_2681_26_15
Type: pfam
Location: 15111 - 15845 (-)
Type: pfam
Location: 15111 - 15845 (-)
Gene ID: HRGMv2_2681_26_16
Type: pfam
Location: 15850 - 16599 (-)
Type: pfam
Location: 15850 - 16599 (-)
Gene ID: HRGMv2_2681_26_17
Type: TC
Location: 16601 - 17527 (-)
Type: TC
Location: 16601 - 17527 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900765705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.