Cluster: HRGMv2_2681_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2681
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2681_22 | HRGMv2_2681_22_17 | 23110 | 24111 | - | GT2 |
| TF | HRGMv2_2681_22 | HRGMv2_2681_22_18 | 24334 | 24711 | + | GntR |
| TC | HRGMv2_2681_22 | HRGMv2_2681_22_19 | 24704 | 25402 | + | 3.A.1.132.6 |
Gene ID: HRGMv2_2681_22_17
Type: CAZyme
Location: 23110 - 24111 (-)
Type: CAZyme
Location: 23110 - 24111 (-)
Gene ID: HRGMv2_2681_22_18
Type: TF
Location: 24334 - 24711 (+)
Type: TF
Location: 24334 - 24711 (+)
Gene ID: HRGMv2_2681_22_19
Type: TC
Location: 24704 - 25402 (+)
Type: TC
Location: 24704 - 25402 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium sp900765705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2681_22_18 | vegan > omnivore | 1.08806 | 0.04649 |