Cluster: HRGMv2_2678_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_00040
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2678_12 | HRGMv2_2678_12_10 | 8710 | 9639 | - | GT4 |
| STP | HRGMv2_2678_12 | HRGMv2_2678_12_11 | 9872 | 10984 | - | Pyr_redox |
| TC | HRGMv2_2678_12 | HRGMv2_2678_12_12 | 10990 | 12426 | - | 2.A.66.2.16 |
| CAZyme | HRGMv2_2678_12 | HRGMv2_2678_12_13 | 12423 | 13406 | - | GT2 |
| pfam | HRGMv2_2678_12 | HRGMv2_2678_12_14 | 13372 | 14811 | - | O-ag_pol_Wzy |
| CAZyme | HRGMv2_2678_12 | HRGMv2_2678_12_15 | 14824 | 15807 | - | GT2 |
| CAZyme | HRGMv2_2678_12 | HRGMv2_2678_12_16 | 16106 | 17230 | - | GT4 |
Gene ID: HRGMv2_2678_12_10
Type: CAZyme
Location: 8710 - 9639 (-)
Type: CAZyme
Location: 8710 - 9639 (-)
Gene ID: HRGMv2_2678_12_11
Type: STP
Location: 9872 - 10984 (-)
Type: STP
Location: 9872 - 10984 (-)
Gene ID: HRGMv2_2678_12_12
Type: TC
Location: 10990 - 12426 (-)
Type: TC
Location: 10990 - 12426 (-)
Gene ID: HRGMv2_2678_12_13
Type: CAZyme
Location: 12423 - 13406 (-)
Type: CAZyme
Location: 12423 - 13406 (-)
Gene ID: HRGMv2_2678_12_14
Type: pfam
Location: 13372 - 14811 (-)
Type: pfam
Location: 13372 - 14811 (-)
Gene ID: HRGMv2_2678_12_15
Type: CAZyme
Location: 14824 - 15807 (-)
Type: CAZyme
Location: 14824 - 15807 (-)
Gene ID: HRGMv2_2678_12_16
Type: CAZyme
Location: 16106 - 17230 (-)
Type: CAZyme
Location: 16106 - 17230 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.