Cluster: HRGMv2_2678_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_7 | HRGMv2_2678_7_15 | 16707 | 18350 | - | 8.A.7.1.1 |
| STP | HRGMv2_2678_7 | HRGMv2_2678_7_16 | 18453 | 18710 | - | PTS-HPr |
| pfam | HRGMv2_2678_7 | HRGMv2_2678_7_17 | 18999 | 19652 | - | DUF4830 |
| CAZyme | HRGMv2_2678_7 | HRGMv2_2678_7_18 | 20134 | 21558 | - | GH25 |
| TC | HRGMv2_2678_7 | HRGMv2_2678_7_19 | 21966 | 23024 | + | 9.A.23.1.1 |
Gene ID: HRGMv2_2678_7_15
Type: TC
Location: 16707 - 18350 (-)
Type: TC
Location: 16707 - 18350 (-)
Gene ID: HRGMv2_2678_7_16
Type: STP
Location: 18453 - 18710 (-)
Type: STP
Location: 18453 - 18710 (-)
Gene ID: HRGMv2_2678_7_17
Type: pfam
Location: 18999 - 19652 (-)
Type: pfam
Location: 18999 - 19652 (-)
Gene ID: HRGMv2_2678_7_18
Type: CAZyme
Location: 20134 - 21558 (-)
Type: CAZyme
Location: 20134 - 21558 (-)
Gene ID: HRGMv2_2678_7_19
Type: TC
Location: 21966 - 23024 (+)
Type: TC
Location: 21966 - 23024 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.