Cluster: HRGMv2_2678_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_00054
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2678_4 | HRGMv2_2678_4_50 | 53221 | 55608 | + | GH2 |
| TC | HRGMv2_2678_4 | HRGMv2_2678_4_51 | 55593 | 56978 | + | 2.A.2.1.1 |
| CAZyme | HRGMv2_2678_4 | HRGMv2_2678_4_52 | 56971 | 58572 | + | GH36 |
| CAZyme | HRGMv2_2678_4 | HRGMv2_2678_4_53 | 58650 | 60704 | - | GH31_1 |
Gene ID: HRGMv2_2678_4_50
Type: CAZyme
Location: 53221 - 55608 (+)
Type: CAZyme
Location: 53221 - 55608 (+)
Gene ID: HRGMv2_2678_4_51
Type: TC
Location: 55593 - 56978 (+)
Type: TC
Location: 55593 - 56978 (+)
Gene ID: HRGMv2_2678_4_52
Type: CAZyme
Location: 56971 - 58572 (+)
Type: CAZyme
Location: 56971 - 58572 (+)
Gene ID: HRGMv2_2678_4_53
Type: CAZyme
Location: 58650 - 60704 (-)
Type: CAZyme
Location: 58650 - 60704 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.