Cluster: HRGMv2_2678_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_00507
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_4 | HRGMv2_2678_4_39 | 34015 | 37221 | - | 3.A.1.122.14 |
| pfam | HRGMv2_2678_4 | HRGMv2_2678_4_40 | 37778 | 38335 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_2678_4 | HRGMv2_2678_4_41 | 38351 | 40774 | - | GH3 |
| CAZyme | HRGMv2_2678_4 | HRGMv2_2678_4_42 | 40831 | 44661 | - | GH3 |
Gene ID: HRGMv2_2678_4_39
Type: TC
Location: 34015 - 37221 (-)
Type: TC
Location: 34015 - 37221 (-)
Gene ID: HRGMv2_2678_4_40
Type: pfam
Location: 37778 - 38335 (-)
Type: pfam
Location: 37778 - 38335 (-)
Gene ID: HRGMv2_2678_4_41
Type: CAZyme
Location: 38351 - 40774 (-)
Type: CAZyme
Location: 38351 - 40774 (-)
Gene ID: HRGMv2_2678_4_42
Type: CAZyme
Location: 40831 - 44661 (-)
Type: CAZyme
Location: 40831 - 44661 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.