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Cluster: HRGMv2_2678_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2678_3 HRGMv2_2678_3_57 66048 68711 + 3.A.3.4.1
TF HRGMv2_2678_3 HRGMv2_2678_3_58 68727 69227 + Trans_reg_C
TC HRGMv2_2678_3 HRGMv2_2678_3_59 69332 72100 + 3.A.3.4.1
NULL(UNKNOWN) HRGMv2_2678_3 HRGMv2_2678_3_60 72114 72278 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2678_3 HRGMv2_2678_3_61 72400 73728 - GH4
TC HRGMv2_2678_3 HRGMv2_2678_3_62 73783 75378 - 4.A.1.1.16
Gene ID: HRGMv2_2678_3_57
Type: TC
Location: 66048 - 68711 (+)
Gene ID: HRGMv2_2678_3_58
Type: TF
Location: 68727 - 69227 (+)
Gene ID: HRGMv2_2678_3_59
Type: TC
Location: 69332 - 72100 (+)
Gene ID: HRGMv2_2678_3_60
Type:
Location: 72114 - 72278 (+)
Gene ID: HRGMv2_2678_3_61
Type: CAZyme
Location: 72400 - 73728 (-)
Gene ID: HRGMv2_2678_3_62
Type: TC
Location: 73783 - 75378 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2678_3_61 vegan > omnivore 1.56920 0.02677
HRGMv2_2678_3_62 vegan > omnivore 1.60959 0.02677

🧭 Explore Read Mapping of CGC

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