Cluster: HRGMv2_2678_CGC31
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_00258
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_105 | HRGMv2_2678_105_2 | 126 | 1646 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2678_105 | HRGMv2_2678_105_3 | 1736 | 2275 | - | OSCP |
| pfam | HRGMv2_2678_105 | HRGMv2_2678_105_4 | 2272 | 2778 | - | ATP-synt_B |
| TC | HRGMv2_2678_105 | HRGMv2_2678_105_5 | 2815 | 3096 | - | 3.A.2.1.2 |
| TC | HRGMv2_2678_105 | HRGMv2_2678_105_6 | 3148 | 3891 | - | 3.A.2.1.5 |
| pfam | HRGMv2_2678_105 | HRGMv2_2678_105_7 | 3892 | 4395 | - | ATP-synt_I |
| pfam | HRGMv2_2678_105 | HRGMv2_2678_105_8 | 4411 | 4671 | - | ATPase_gene1 |
| CAZyme | HRGMv2_2678_105 | HRGMv2_2678_105_9 | 5402 | 6535 | - | GT5 |
Gene ID: HRGMv2_2678_105_2
Type: TC
Location: 126 - 1646 (-)
Type: TC
Location: 126 - 1646 (-)
Gene ID: HRGMv2_2678_105_3
Type: pfam
Location: 1736 - 2275 (-)
Type: pfam
Location: 1736 - 2275 (-)
Gene ID: HRGMv2_2678_105_4
Type: pfam
Location: 2272 - 2778 (-)
Type: pfam
Location: 2272 - 2778 (-)
Gene ID: HRGMv2_2678_105_5
Type: TC
Location: 2815 - 3096 (-)
Type: TC
Location: 2815 - 3096 (-)
Gene ID: HRGMv2_2678_105_6
Type: TC
Location: 3148 - 3891 (-)
Type: TC
Location: 3148 - 3891 (-)
Gene ID: HRGMv2_2678_105_7
Type: pfam
Location: 3892 - 4395 (-)
Type: pfam
Location: 3892 - 4395 (-)
Gene ID: HRGMv2_2678_105_8
Type: pfam
Location: 4411 - 4671 (-)
Type: pfam
Location: 4411 - 4671 (-)
Gene ID: HRGMv2_2678_105_9
Type: CAZyme
Location: 5402 - 6535 (-)
Type: CAZyme
Location: 5402 - 6535 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.