Cluster: HRGMv2_2678_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_02903
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2678_3 | HRGMv2_2678_3_9 | 11277 | 13232 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_2678_3 | HRGMv2_2678_3_10 | 13472 | 14827 | + | GH13_20 |
| TF | HRGMv2_2678_3 | HRGMv2_2678_3_11 | 14903 | 15421 | + | HTH_11 |
| NULL(UNKNOWN) | HRGMv2_2678_3 | HRGMv2_2678_3_12 | 15518 | 16069 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2678_3 | HRGMv2_2678_3_13 | 16136 | 16900 | - | 3.A.1.3.25 |
| TC | HRGMv2_2678_3 | HRGMv2_2678_3_14 | 16890 | 17654 | - | 3.A.1.3.20 |
| TC | HRGMv2_2678_3 | HRGMv2_2678_3_15 | 17767 | 18597 | - | 3.A.1.3.27 |
Gene ID: HRGMv2_2678_3_9
Type: CAZyme
Location: 11277 - 13232 (-)
Type: CAZyme
Location: 11277 - 13232 (-)
Gene ID: HRGMv2_2678_3_10
Type: CAZyme
Location: 13472 - 14827 (+)
Type: CAZyme
Location: 13472 - 14827 (+)
Gene ID: HRGMv2_2678_3_11
Type: TF
Location: 14903 - 15421 (+)
Type: TF
Location: 14903 - 15421 (+)
Gene ID: HRGMv2_2678_3_12
Type:
Location: 15518 - 16069 (+)
Type:
Location: 15518 - 16069 (+)
Gene ID: HRGMv2_2678_3_13
Type: TC
Location: 16136 - 16900 (-)
Type: TC
Location: 16136 - 16900 (-)
Gene ID: HRGMv2_2678_3_14
Type: TC
Location: 16890 - 17654 (-)
Type: TC
Location: 16890 - 17654 (-)
Gene ID: HRGMv2_2678_3_15
Type: TC
Location: 17767 - 18597 (-)
Type: TC
Location: 17767 - 18597 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.