Cluster: HRGMv2_2678_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2678
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2678_60 | HRGMv2_2678_60_10 | 8501 | 9166 | + | GH23 |
| peptidase | HRGMv2_2678_60 | HRGMv2_2678_60_11 | 9191 | 10594 | + | M18.UPW |
| TF | HRGMv2_2678_60 | HRGMv2_2678_60_12 | 10750 | 11595 | + | MerR |
| CAZyme | HRGMv2_2678_60 | HRGMv2_2678_60_13 | 11602 | 12453 | - | CE4 |
| TC | HRGMv2_2678_60 | HRGMv2_2678_60_14 | 13223 | 15073 | + | 9.B.34.1.2 |
Gene ID: HRGMv2_2678_60_10
Type: CAZyme
Location: 8501 - 9166 (+)
Type: CAZyme
Location: 8501 - 9166 (+)
Gene ID: HRGMv2_2678_60_11
Type: peptidase
Location: 9191 - 10594 (+)
Type: peptidase
Location: 9191 - 10594 (+)
Gene ID: HRGMv2_2678_60_12
Type: TF
Location: 10750 - 11595 (+)
Type: TF
Location: 10750 - 11595 (+)
Gene ID: HRGMv2_2678_60_13
Type: CAZyme
Location: 11602 - 12453 (-)
Type: CAZyme
Location: 11602 - 12453 (-)
Gene ID: HRGMv2_2678_60_14
Type: TC
Location: 13223 - 15073 (+)
Type: TC
Location: 13223 - 15073 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.