Cluster: HRGMv2_2678_CGC24
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_06157
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_53 | HRGMv2_2678_53_13 | 12231 | 13607 | + | 1.A.26.1.3 |
| CAZyme | HRGMv2_2678_53 | HRGMv2_2678_53_14 | 13751 | 16012 | - | GT35 |
| TF | HRGMv2_2678_53 | HRGMv2_2678_53_15 | 16142 | 16999 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2678_53 | HRGMv2_2678_53_16 | 17221 | 18006 | + | 3.A.1.3.16 |
| TC | HRGMv2_2678_53 | HRGMv2_2678_53_17 | 18047 | 18784 | + | 3.A.1.3.16 |
| TC | HRGMv2_2678_53 | HRGMv2_2678_53_18 | 18785 | 19558 | + | 3.A.1.3.20 |
Gene ID: HRGMv2_2678_53_13
Type: TC
Location: 12231 - 13607 (+)
Type: TC
Location: 12231 - 13607 (+)
Gene ID: HRGMv2_2678_53_14
Type: CAZyme
Location: 13751 - 16012 (-)
Type: CAZyme
Location: 13751 - 16012 (-)
Gene ID: HRGMv2_2678_53_15
Type: TF
Location: 16142 - 16999 (+)
Type: TF
Location: 16142 - 16999 (+)
Gene ID: HRGMv2_2678_53_16
Type: TC
Location: 17221 - 18006 (+)
Type: TC
Location: 17221 - 18006 (+)
Gene ID: HRGMv2_2678_53_17
Type: TC
Location: 18047 - 18784 (+)
Type: TC
Location: 18047 - 18784 (+)
Gene ID: HRGMv2_2678_53_18
Type: TC
Location: 18785 - 19558 (+)
Type: TC
Location: 18785 - 19558 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.