Cluster: HRGMv2_2678_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_00264
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_43 | HRGMv2_2678_43_7 | 4551 | 4868 | + | 4.A.3.2.3 |
| TC | HRGMv2_2678_43 | HRGMv2_2678_43_8 | 4884 | 6152 | + | 4.A.3.2.2 |
| pfam | HRGMv2_2678_43 | HRGMv2_2678_43_9 | 6192 | 6527 | + | PTS_IIA |
| CAZyme | HRGMv2_2678_43 | HRGMv2_2678_43_10 | 6511 | 7956 | + | GH1 |
Gene ID: HRGMv2_2678_43_7
Type: TC
Location: 4551 - 4868 (+)
Type: TC
Location: 4551 - 4868 (+)
Gene ID: HRGMv2_2678_43_8
Type: TC
Location: 4884 - 6152 (+)
Type: TC
Location: 4884 - 6152 (+)
Gene ID: HRGMv2_2678_43_9
Type: pfam
Location: 6192 - 6527 (+)
Type: pfam
Location: 6192 - 6527 (+)
Gene ID: HRGMv2_2678_43_10
Type: CAZyme
Location: 6511 - 7956 (+)
Type: CAZyme
Location: 6511 - 7956 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2678_43_10 | vegetarian > omnivore | 1.32632 | 0.04910 |