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Cluster: HRGMv2_2678_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2678_1 HRGMv2_2678_1_110 127007 127840 - 3.A.1.132.3
pfam HRGMv2_2678_1 HRGMv2_2678_1_111 128049 129614 + Polysacc_synt
TC HRGMv2_2678_1 HRGMv2_2678_1_112 129767 131665 + 9.B.18.2.1
pfam HRGMv2_2678_1 HRGMv2_2678_1_113 131750 133036 + Orn_DAP_Arg_deC | Orn_Arg_deC_N
NULL(UNKNOWN) HRGMv2_2678_1 HRGMv2_2678_1_114 133239 133637 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2678_1 HRGMv2_2678_1_115 133735 134640 - 8.A.21.2.2
pfam HRGMv2_2678_1 HRGMv2_2678_1_116 134656 135117 - NfeD
CAZyme HRGMv2_2678_1 HRGMv2_2678_1_117 135289 137145 - GH13_39
CAZyme HRGMv2_2678_1 HRGMv2_2678_1_118 137219 139624 - GT35
Gene ID: HRGMv2_2678_1_110
Type: TC
Location: 127007 - 127840 (-)
Gene ID: HRGMv2_2678_1_111
Type: pfam
Location: 128049 - 129614 (+)
Gene ID: HRGMv2_2678_1_112
Type: TC
Location: 129767 - 131665 (+)
Gene ID: HRGMv2_2678_1_113
Type: pfam
Location: 131750 - 133036 (+)
Gene ID: HRGMv2_2678_1_114
Type:
Location: 133239 - 133637 (+)
Gene ID: HRGMv2_2678_1_115
Type: TC
Location: 133735 - 134640 (-)
Gene ID: HRGMv2_2678_1_116
Type: pfam
Location: 134656 - 135117 (-)
Gene ID: HRGMv2_2678_1_117
Type: CAZyme
Location: 135289 - 137145 (-)
Gene ID: HRGMv2_2678_1_118
Type: CAZyme
Location: 137219 - 139624 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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