Cluster: HRGMv2_2678_CGC16
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- CGC Family ID: CGCFAM_01009
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_27 | HRGMv2_2678_27_12 | 10703 | 11407 | - | 1.A.14.2.2 |
| pfam | HRGMv2_2678_27 | HRGMv2_2678_27_13 | 11517 | 12599 | + | Radical_SAM | HemN_C |
| TC | HRGMv2_2678_27 | HRGMv2_2678_27_14 | 12606 | 13199 | - | 3.A.1.17.3 |
| pfam | HRGMv2_2678_27 | HRGMv2_2678_27_15 | 13193 | 13963 | - | BPD_transp_1 |
| TC | HRGMv2_2678_27 | HRGMv2_2678_27_16 | 14425 | 15453 | + | 2.A.26.1.1 |
| pfam | HRGMv2_2678_27 | HRGMv2_2678_27_17 | 15467 | 15877 | + | Pep_deformylase |
| TC | HRGMv2_2678_27 | HRGMv2_2678_27_18 | 16412 | 17278 | - | 3.A.1.1.48 |
| TC | HRGMv2_2678_27 | HRGMv2_2678_27_19 | 17281 | 18258 | - | 3.A.1.1.4 |
| pfam | HRGMv2_2678_27 | HRGMv2_2678_27_20 | 18356 | 19801 | - | TAT_signal |
| TF | HRGMv2_2678_27 | HRGMv2_2678_27_21 | 19879 | 20886 | - | LacI |
| CAZyme | HRGMv2_2678_27 | HRGMv2_2678_27_22 | 21415 | 23850 | + | GH94 |
| TC | HRGMv2_2678_27 | HRGMv2_2678_27_23 | 24752 | 25267 | + | 3.A.1.26.5 |
Gene ID: HRGMv2_2678_27_12
Type: TC
Location: 10703 - 11407 (-)
Type: TC
Location: 10703 - 11407 (-)
Gene ID: HRGMv2_2678_27_13
Type: pfam
Location: 11517 - 12599 (+)
Type: pfam
Location: 11517 - 12599 (+)
Gene ID: HRGMv2_2678_27_14
Type: TC
Location: 12606 - 13199 (-)
Type: TC
Location: 12606 - 13199 (-)
Gene ID: HRGMv2_2678_27_15
Type: pfam
Location: 13193 - 13963 (-)
Type: pfam
Location: 13193 - 13963 (-)
Gene ID: HRGMv2_2678_27_16
Type: TC
Location: 14425 - 15453 (+)
Type: TC
Location: 14425 - 15453 (+)
Gene ID: HRGMv2_2678_27_17
Type: pfam
Location: 15467 - 15877 (+)
Type: pfam
Location: 15467 - 15877 (+)
Gene ID: HRGMv2_2678_27_18
Type: TC
Location: 16412 - 17278 (-)
Type: TC
Location: 16412 - 17278 (-)
Gene ID: HRGMv2_2678_27_19
Type: TC
Location: 17281 - 18258 (-)
Type: TC
Location: 17281 - 18258 (-)
Gene ID: HRGMv2_2678_27_20
Type: pfam
Location: 18356 - 19801 (-)
Type: pfam
Location: 18356 - 19801 (-)
Gene ID: HRGMv2_2678_27_21
Type: TF
Location: 19879 - 20886 (-)
Type: TF
Location: 19879 - 20886 (-)
Gene ID: HRGMv2_2678_27_22
Type: CAZyme
Location: 21415 - 23850 (+)
Type: CAZyme
Location: 21415 - 23850 (+)
Gene ID: HRGMv2_2678_27_23
Type: TC
Location: 24752 - 25267 (+)
Type: TC
Location: 24752 - 25267 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.