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Cluster: HRGMv2_2678_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2678_25 HRGMv2_2678_25_23 22180 23403 + 9.B.10.1.1
pfam HRGMv2_2678_25 HRGMv2_2678_25_24 23484 24446 + cobW | DUF1980_C
NULL(UNKNOWN) HRGMv2_2678_25 HRGMv2_2678_25_25 24475 24939 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2678_25 HRGMv2_2678_25_26 25019 25939 - GT2
CAZyme HRGMv2_2678_25 HRGMv2_2678_25_27 25960 27003 - GT2
pfam HRGMv2_2678_25 HRGMv2_2678_25_28 27155 27805 - Hydrolase | HAD | HAD_2
pfam HRGMv2_2678_25 HRGMv2_2678_25_29 27984 29165 + Patatin
TC HRGMv2_2678_25 HRGMv2_2678_25_30 29152 30783 + 8.A.7.1.5
Gene ID: HRGMv2_2678_25_23
Type: TC
Location: 22180 - 23403 (+)
Gene ID: HRGMv2_2678_25_24
Type: pfam
Location: 23484 - 24446 (+)
Gene ID: HRGMv2_2678_25_25
Type:
Location: 24475 - 24939 (+)
Gene ID: HRGMv2_2678_25_26
Type: CAZyme
Location: 25019 - 25939 (-)
Gene ID: HRGMv2_2678_25_27
Type: CAZyme
Location: 25960 - 27003 (-)
Gene ID: HRGMv2_2678_25_28
Type: pfam
Location: 27155 - 27805 (-)
Gene ID: HRGMv2_2678_25_29
Type: pfam
Location: 27984 - 29165 (+)
Gene ID: HRGMv2_2678_25_30
Type: TC
Location: 29152 - 30783 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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