Cluster: HRGMv2_2678_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_15 | HRGMv2_2678_15_27 | 29702 | 30928 | + | 3.A.1.1.16 |
| TC | HRGMv2_2678_15 | HRGMv2_2678_15_28 | 30946 | 31836 | + | 3.A.1.1.44 |
| TC | HRGMv2_2678_15 | HRGMv2_2678_15_29 | 31840 | 32694 | + | 3.A.1.1.6 |
| CAZyme | HRGMv2_2678_15 | HRGMv2_2678_15_30 | 32720 | 34447 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_2678_15_27
Type: TC
Location: 29702 - 30928 (+)
Type: TC
Location: 29702 - 30928 (+)
Gene ID: HRGMv2_2678_15_28
Type: TC
Location: 30946 - 31836 (+)
Type: TC
Location: 30946 - 31836 (+)
Gene ID: HRGMv2_2678_15_29
Type: TC
Location: 31840 - 32694 (+)
Type: TC
Location: 31840 - 32694 (+)
Gene ID: HRGMv2_2678_15_30
Type: CAZyme
Location: 32720 - 34447 (+)
Type: CAZyme
Location: 32720 - 34447 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2678_15_27 | vegan > omnivore | 2.10957 | 0.02677 |
| HRGMv2_2678_15_28 | vegan > omnivore | 2.07599 | 0.02677 |
| HRGMv2_2678_15_29 | vegan > omnivore | 2.03526 | 0.02677 |
| HRGMv2_2678_15_30 | vegan > omnivore | 2.03208 | 0.02677 |