Cluster: HRGMv2_2678_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2678
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2678_13 | HRGMv2_2678_13_27 | 28319 | 29632 | + | 2.A.103.1.3 |
| CAZyme | HRGMv2_2678_13 | HRGMv2_2678_13_28 | 29684 | 30811 | + | GT28 |
| pfam | HRGMv2_2678_13 | HRGMv2_2678_13_29 | 30849 | 32432 | + | POTRA_1 |
| pfam | HRGMv2_2678_13 | HRGMv2_2678_13_30 | 32456 | 33934 | + | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_2678_13 | HRGMv2_2678_13_31 | 34219 | 34446 | + | 3.D.1.6.4 |
Gene ID: HRGMv2_2678_13_27
Type: TC
Location: 28319 - 29632 (+)
Type: TC
Location: 28319 - 29632 (+)
Gene ID: HRGMv2_2678_13_28
Type: CAZyme
Location: 29684 - 30811 (+)
Type: CAZyme
Location: 29684 - 30811 (+)
Gene ID: HRGMv2_2678_13_29
Type: pfam
Location: 30849 - 32432 (+)
Type: pfam
Location: 30849 - 32432 (+)
Gene ID: HRGMv2_2678_13_30
Type: pfam
Location: 32456 - 33934 (+)
Type: pfam
Location: 32456 - 33934 (+)
Gene ID: HRGMv2_2678_13_31
Type: TC
Location: 34219 - 34446 (+)
Type: TC
Location: 34219 - 34446 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.