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Cluster: HRGMv2_2678_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2678_1 HRGMv2_2678_1_71 76688 78499 - 3.A.1.135.6
TC HRGMv2_2678_1 HRGMv2_2678_1_72 78501 80798 - 3.A.1.135.6
TF HRGMv2_2678_1 HRGMv2_2678_1_73 80782 81291 - MarR
TC HRGMv2_2678_1 HRGMv2_2678_1_74 81495 82493 + 2.A.58.2.2
peptidase HRGMv2_2678_1 HRGMv2_2678_1_75 82556 83212 + C60.UPA
NULL(UNKNOWN) HRGMv2_2678_1 HRGMv2_2678_1_76 83599 83715 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2678_1 HRGMv2_2678_1_77 83978 85756 + 2.A.58.2.2
NULL(UNKNOWN) HRGMv2_2678_1 HRGMv2_2678_1_78 85807 86181 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2678_1 HRGMv2_2678_1_79 86396 89002 + GT51
Gene ID: HRGMv2_2678_1_71
Type: TC
Location: 76688 - 78499 (-)
Gene ID: HRGMv2_2678_1_72
Type: TC
Location: 78501 - 80798 (-)
Gene ID: HRGMv2_2678_1_73
Type: TF
Location: 80782 - 81291 (-)
Gene ID: HRGMv2_2678_1_74
Type: TC
Location: 81495 - 82493 (+)
Gene ID: HRGMv2_2678_1_75
Type: peptidase
Location: 82556 - 83212 (+)
Gene ID: HRGMv2_2678_1_76
Type:
Location: 83599 - 83715 (+)
Gene ID: HRGMv2_2678_1_77
Type: TC
Location: 83978 - 85756 (+)
Gene ID: HRGMv2_2678_1_78
Type:
Location: 85807 - 86181 (-)
Gene ID: HRGMv2_2678_1_79
Type: CAZyme
Location: 86396 - 89002 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
Faecalibacterium
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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