Cluster: HRGMv2_2676_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2676
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_565 | 592684 | 593358 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_566 | 593406 | 594533 | + | GT4 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_567 | 594538 | 595665 | + | PS_pyruv_trans |
| STP | HRGMv2_2676_1 | HRGMv2_2676_1_568 | 595655 | 596815 | + | Fer4 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_569 | 596832 | 598076 | + | GT4 |
Gene ID: HRGMv2_2676_1_565
Type: TC
Location: 592684 - 593358 (+)
Type: TC
Location: 592684 - 593358 (+)
Gene ID: HRGMv2_2676_1_566
Type: CAZyme
Location: 593406 - 594533 (+)
Type: CAZyme
Location: 593406 - 594533 (+)
Gene ID: HRGMv2_2676_1_567
Type: pfam
Location: 594538 - 595665 (+)
Type: pfam
Location: 594538 - 595665 (+)
Gene ID: HRGMv2_2676_1_568
Type: STP
Location: 595655 - 596815 (+)
Type: STP
Location: 595655 - 596815 (+)
Gene ID: HRGMv2_2676_1_569
Type: CAZyme
Location: 596832 - 598076 (+)
Type: CAZyme
Location: 596832 - 598076 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2676_1_566 | vegan > omnivore | 1.57668 | 0.02258 |