Cluster: HRGMv2_2676_CGC32
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2676
- CGC Family ID: CGCFAM_01109
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2775 | 2982055 | 2983470 | + | 4.A.1.2.13 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2776 | 2983489 | 2985123 | + | GH13_29 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2777 | 2985331 | 2986458 | - | GH105 |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_2778 | 2986469 | 2987398 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2779 | 2987488 | 2987829 | - | 2.A.56.1.5 |
Gene ID: HRGMv2_2676_1_2775
Type: TC
Location: 2982055 - 2983470 (+)
Type: TC
Location: 2982055 - 2983470 (+)
Gene ID: HRGMv2_2676_1_2776
Type: CAZyme
Location: 2983489 - 2985123 (+)
Type: CAZyme
Location: 2983489 - 2985123 (+)
Gene ID: HRGMv2_2676_1_2777
Type: CAZyme
Location: 2985331 - 2986458 (-)
Type: CAZyme
Location: 2985331 - 2986458 (-)
Gene ID: HRGMv2_2676_1_2778
Type: TF
Location: 2986469 - 2987398 (-)
Type: TF
Location: 2986469 - 2987398 (-)
Gene ID: HRGMv2_2676_1_2779
Type: TC
Location: 2987488 - 2987829 (-)
Type: TC
Location: 2987488 - 2987829 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2676_1_2777 | vegetarian > vegan | 1.04321 | 0.01319 |
| HRGMv2_2676_1_2778 | vegetarian > vegan | 1.05047 | 0.01319 |
| HRGMv2_2676_1_2779 | vegetarian > vegan | 1.40448 | 0.01319 |