Cluster: HRGMv2_2676_CGC31
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2676
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2732 | 2933535 | 2934215 | - | 9.B.28.1.2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2733 | 2934253 | 2935443 | - | GH130_1 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2734 | 2935430 | 2936611 | - | GlcNAc_2-epim |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2735 | 2936752 | 2937771 | - | GH130_2 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2736 | 2937971 | 2938816 | - | 3.A.1.1.34 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2737 | 2938833 | 2939780 | - | 3.A.1.1.28 |
| STP | HRGMv2_2676_1 | HRGMv2_2676_1_2738 | 2939852 | 2941264 | - | SBP_bac_1 |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_2739 | 2941662 | 2942648 | + | LacI |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2740 | 2942761 | 2943873 | - | CE2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2741 | 2944147 | 2945076 | + | GH113 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2742 | 2945073 | 2946155 | + | CBM35inCE17 | CE17 |
Gene ID: HRGMv2_2676_1_2732
Type: TC
Location: 2933535 - 2934215 (-)
Type: TC
Location: 2933535 - 2934215 (-)
Gene ID: HRGMv2_2676_1_2733
Type: CAZyme
Location: 2934253 - 2935443 (-)
Type: CAZyme
Location: 2934253 - 2935443 (-)
Gene ID: HRGMv2_2676_1_2734
Type: pfam
Location: 2935430 - 2936611 (-)
Type: pfam
Location: 2935430 - 2936611 (-)
Gene ID: HRGMv2_2676_1_2735
Type: CAZyme
Location: 2936752 - 2937771 (-)
Type: CAZyme
Location: 2936752 - 2937771 (-)
Gene ID: HRGMv2_2676_1_2736
Type: TC
Location: 2937971 - 2938816 (-)
Type: TC
Location: 2937971 - 2938816 (-)
Gene ID: HRGMv2_2676_1_2737
Type: TC
Location: 2938833 - 2939780 (-)
Type: TC
Location: 2938833 - 2939780 (-)
Gene ID: HRGMv2_2676_1_2738
Type: STP
Location: 2939852 - 2941264 (-)
Type: STP
Location: 2939852 - 2941264 (-)
Gene ID: HRGMv2_2676_1_2739
Type: TF
Location: 2941662 - 2942648 (+)
Type: TF
Location: 2941662 - 2942648 (+)
Gene ID: HRGMv2_2676_1_2740
Type: CAZyme
Location: 2942761 - 2943873 (-)
Type: CAZyme
Location: 2942761 - 2943873 (-)
Gene ID: HRGMv2_2676_1_2741
Type: CAZyme
Location: 2944147 - 2945076 (+)
Type: CAZyme
Location: 2944147 - 2945076 (+)
Gene ID: HRGMv2_2676_1_2742
Type: CAZyme
Location: 2945073 - 2946155 (+)
Type: CAZyme
Location: 2945073 - 2946155 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.