Cluster: HRGMv2_2676_CGC25
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2676
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2437 | 2607382 | 2607684 | + | 1.E.14.1.17 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2438 | 2607677 | 2608384 | + | 2.A.122.1.6 |
| STP | HRGMv2_2676_1 | HRGMv2_2676_1_2439 | 2608554 | 2608811 | - | HMA |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_2440 | 2608933 | 2609790 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2441 | 2609977 | 2612238 | + | GT35 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2442 | 2612393 | 2613190 | - | 2.A.64.1.3 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2443 | 2613193 | 2613390 | - | TatA_B_E |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2444 | 2613492 | 2614034 | - | TatA_B_E |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2445 | 2614292 | 2616067 | - | 3.A.1.135.7 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2446 | 2616064 | 2617803 | - | 3.A.1.135.5 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2447 | 2618103 | 2619212 | + | SseB | Sel1 | Sel1 | Sel1 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2448 | 2619295 | 2621112 | + | 1.A.33.1.4 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2449 | 2621193 | 2621420 | + | DUF1653 |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_2450 | 2621509 | 2622537 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2451 | 2622755 | 2623204 | + | 1.A.22.1.3 |
Gene ID: HRGMv2_2676_1_2437
Type: TC
Location: 2607382 - 2607684 (+)
Type: TC
Location: 2607382 - 2607684 (+)
Gene ID: HRGMv2_2676_1_2438
Type: TC
Location: 2607677 - 2608384 (+)
Type: TC
Location: 2607677 - 2608384 (+)
Gene ID: HRGMv2_2676_1_2439
Type: STP
Location: 2608554 - 2608811 (-)
Type: STP
Location: 2608554 - 2608811 (-)
Gene ID: HRGMv2_2676_1_2440
Type: TF
Location: 2608933 - 2609790 (-)
Type: TF
Location: 2608933 - 2609790 (-)
Gene ID: HRGMv2_2676_1_2441
Type: CAZyme
Location: 2609977 - 2612238 (+)
Type: CAZyme
Location: 2609977 - 2612238 (+)
Gene ID: HRGMv2_2676_1_2442
Type: TC
Location: 2612393 - 2613190 (-)
Type: TC
Location: 2612393 - 2613190 (-)
Gene ID: HRGMv2_2676_1_2443
Type: pfam
Location: 2613193 - 2613390 (-)
Type: pfam
Location: 2613193 - 2613390 (-)
Gene ID: HRGMv2_2676_1_2444
Type: pfam
Location: 2613492 - 2614034 (-)
Type: pfam
Location: 2613492 - 2614034 (-)
Gene ID: HRGMv2_2676_1_2445
Type: TC
Location: 2614292 - 2616067 (-)
Type: TC
Location: 2614292 - 2616067 (-)
Gene ID: HRGMv2_2676_1_2446
Type: TC
Location: 2616064 - 2617803 (-)
Type: TC
Location: 2616064 - 2617803 (-)
Gene ID: HRGMv2_2676_1_2447
Type: pfam
Location: 2618103 - 2619212 (+)
Type: pfam
Location: 2618103 - 2619212 (+)
Gene ID: HRGMv2_2676_1_2448
Type: TC
Location: 2619295 - 2621112 (+)
Type: TC
Location: 2619295 - 2621112 (+)
Gene ID: HRGMv2_2676_1_2449
Type: pfam
Location: 2621193 - 2621420 (+)
Type: pfam
Location: 2621193 - 2621420 (+)
Gene ID: HRGMv2_2676_1_2450
Type:
Location: 2621509 - 2622537 (+)
Type:
Location: 2621509 - 2622537 (+)
Gene ID: HRGMv2_2676_1_2451
Type: TC
Location: 2622755 - 2623204 (+)
Type: TC
Location: 2622755 - 2623204 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.