Cluster: HRGMv2_2676_CGC24
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2676
- CGC Family ID: CGCFAM_00688
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2297 | 2476482 | 2478113 | - | 8.A.7.1.5 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2298 | 2478100 | 2479296 | - | Patatin |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2299 | 2479476 | 2480126 | + | Hydrolase | HAD | HAD_2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_2300 | 2480231 | 2481253 | + | GT2 |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_2301 | 2481304 | 2482023 | - | LytTR |
| peptidase | HRGMv2_2676_1 | HRGMv2_2676_1_2302 | 2482204 | 2484003 | - | M24.UPB |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2303 | 2484285 | 2485409 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_2304 | 2485490 | 2486452 | + | cobW | DUF1980_C |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_2305 | 2486481 | 2486939 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_2306 | 2487066 | 2489117 | + | 3.A.24.1.1 |
Gene ID: HRGMv2_2676_1_2297
Type: TC
Location: 2476482 - 2478113 (-)
Type: TC
Location: 2476482 - 2478113 (-)
Gene ID: HRGMv2_2676_1_2298
Type: pfam
Location: 2478100 - 2479296 (-)
Type: pfam
Location: 2478100 - 2479296 (-)
Gene ID: HRGMv2_2676_1_2299
Type: pfam
Location: 2479476 - 2480126 (+)
Type: pfam
Location: 2479476 - 2480126 (+)
Gene ID: HRGMv2_2676_1_2300
Type: CAZyme
Location: 2480231 - 2481253 (+)
Type: CAZyme
Location: 2480231 - 2481253 (+)
Gene ID: HRGMv2_2676_1_2301
Type: TF
Location: 2481304 - 2482023 (-)
Type: TF
Location: 2481304 - 2482023 (-)
Gene ID: HRGMv2_2676_1_2302
Type: peptidase
Location: 2482204 - 2484003 (-)
Type: peptidase
Location: 2482204 - 2484003 (-)
Gene ID: HRGMv2_2676_1_2303
Type: TC
Location: 2484285 - 2485409 (+)
Type: TC
Location: 2484285 - 2485409 (+)
Gene ID: HRGMv2_2676_1_2304
Type: pfam
Location: 2485490 - 2486452 (+)
Type: pfam
Location: 2485490 - 2486452 (+)
Gene ID: HRGMv2_2676_1_2305
Type:
Location: 2486481 - 2486939 (+)
Type:
Location: 2486481 - 2486939 (+)
Gene ID: HRGMv2_2676_1_2306
Type: TC
Location: 2487066 - 2489117 (+)
Type: TC
Location: 2487066 - 2489117 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.