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Cluster: HRGMv2_2676_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2676_1 HRGMv2_2676_1_2079 2199543 2200919 + 2.A.66.1.33
CAZyme HRGMv2_2676_1 HRGMv2_2676_1_2080 2200970 2202019 - GH170
TC HRGMv2_2676_1 HRGMv2_2676_1_2081 2202012 2203454 - 4.A.1.2.7
STP HRGMv2_2676_1 HRGMv2_2676_1_2082 2203524 2204432 - SIS
TF HRGMv2_2676_1 HRGMv2_2676_1_2083 2204536 2205501 + HTH_6
TC HRGMv2_2676_1 HRGMv2_2676_1_2084 2205588 2206562 - 2.A.19.5.2
NULL(UNKNOWN) HRGMv2_2676_1 HRGMv2_2676_1_2085 2206657 2207004 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2676_1 HRGMv2_2676_1_2086 2207020 2208300 - 2.A.47.4.7
Gene ID: HRGMv2_2676_1_2079
Type: TC
Location: 2199543 - 2200919 (+)
Gene ID: HRGMv2_2676_1_2080
Type: CAZyme
Location: 2200970 - 2202019 (-)
Gene ID: HRGMv2_2676_1_2081
Type: TC
Location: 2202012 - 2203454 (-)
Gene ID: HRGMv2_2676_1_2082
Type: STP
Location: 2203524 - 2204432 (-)
Gene ID: HRGMv2_2676_1_2083
Type: TF
Location: 2204536 - 2205501 (+)
Gene ID: HRGMv2_2676_1_2084
Type: TC
Location: 2205588 - 2206562 (-)
Gene ID: HRGMv2_2676_1_2085
Type:
Location: 2206657 - 2207004 (-)
Gene ID: HRGMv2_2676_1_2086
Type: TC
Location: 2207020 - 2208300 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2676_1_2086 vegan > omnivore 1.02260 0.02258

🧭 Explore Read Mapping of CGC

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