Cluster: HRGMv2_2676_CGC2
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_2676
- CGC Family ID: CGCFAM_10146
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_230 | 246932 | 248728 | - | PL33_1 |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_231 | 248743 | 250005 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_232 | 249980 | 251797 | - | 8.A.59.2.1 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_233 | 252142 | 253461 | + | 3.A.1.1.44 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_234 | 253638 | 254564 | + | 3.A.1.1.20 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_235 | 254581 | 255441 | + | 3.A.1.1.11 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_236 | 255515 | 257308 | + | GH2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_237 | 257311 | 258474 | + | GH88 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_238 | 258474 | 260162 | + | GH154 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_239 | 260258 | 263272 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_240 | 263263 | 263469 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_241 | 263624 | 264535 | - | 0035607 | 0036286 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_242 | 264876 | 265907 | + | 2.A.56.1.5 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_243 | 265926 | 266435 | + | 2.A.56.1.5 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_244 | 266456 | 267757 | + | 2.A.56.1.5 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_245 | 267782 | 269155 | + | GH28 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_246 | 269248 | 270417 | + | MFS_1 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_247 | 270701 | 273316 | + | CBM67 | GH78 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_248 | 273427 | 274275 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_249 | 274279 | 276093 | - | CBM32 | GH43_28 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_250 | 276098 | 278305 | - | GH2 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_251 | 278387 | 279877 | - | MFS_2 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_252 | 280106 | 281407 | + | GH1 |
| STP | HRGMv2_2676_1 | HRGMv2_2676_1_253 | 281462 | 281998 | - | TetR_N |
| sulfatase | HRGMv2_2676_1 | HRGMv2_2676_1_254 | 282261 | 283268 | + | S1_2 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_255 | 283344 | 284690 | + | 2.A.66.1.13 |
Gene ID: HRGMv2_2676_1_230
Type: CAZyme
Location: 246932 - 248728 (-)
Type: CAZyme
Location: 246932 - 248728 (-)
Gene ID: HRGMv2_2676_1_231
Type: TF
Location: 248743 - 250005 (-)
Type: TF
Location: 248743 - 250005 (-)
Gene ID: HRGMv2_2676_1_232
Type: TC
Location: 249980 - 251797 (-)
Type: TC
Location: 249980 - 251797 (-)
Gene ID: HRGMv2_2676_1_233
Type: TC
Location: 252142 - 253461 (+)
Type: TC
Location: 252142 - 253461 (+)
Gene ID: HRGMv2_2676_1_234
Type: TC
Location: 253638 - 254564 (+)
Type: TC
Location: 253638 - 254564 (+)
Gene ID: HRGMv2_2676_1_235
Type: TC
Location: 254581 - 255441 (+)
Type: TC
Location: 254581 - 255441 (+)
Gene ID: HRGMv2_2676_1_236
Type: CAZyme
Location: 255515 - 257308 (+)
Type: CAZyme
Location: 255515 - 257308 (+)
Gene ID: HRGMv2_2676_1_237
Type: CAZyme
Location: 257311 - 258474 (+)
Type: CAZyme
Location: 257311 - 258474 (+)
Gene ID: HRGMv2_2676_1_238
Type: CAZyme
Location: 258474 - 260162 (+)
Type: CAZyme
Location: 258474 - 260162 (+)
Gene ID: HRGMv2_2676_1_239
Type: CAZyme
Location: 260258 - 263272 (+)
Type: CAZyme
Location: 260258 - 263272 (+)
Gene ID: HRGMv2_2676_1_240
Type:
Location: 263263 - 263469 (-)
Type:
Location: 263263 - 263469 (-)
Gene ID: HRGMv2_2676_1_241
Type: TF
Location: 263624 - 264535 (-)
Type: TF
Location: 263624 - 264535 (-)
Gene ID: HRGMv2_2676_1_242
Type: TC
Location: 264876 - 265907 (+)
Type: TC
Location: 264876 - 265907 (+)
Gene ID: HRGMv2_2676_1_243
Type: TC
Location: 265926 - 266435 (+)
Type: TC
Location: 265926 - 266435 (+)
Gene ID: HRGMv2_2676_1_244
Type: TC
Location: 266456 - 267757 (+)
Type: TC
Location: 266456 - 267757 (+)
Gene ID: HRGMv2_2676_1_245
Type: CAZyme
Location: 267782 - 269155 (+)
Type: CAZyme
Location: 267782 - 269155 (+)
Gene ID: HRGMv2_2676_1_246
Type: pfam
Location: 269248 - 270417 (+)
Type: pfam
Location: 269248 - 270417 (+)
Gene ID: HRGMv2_2676_1_247
Type: CAZyme
Location: 270701 - 273316 (+)
Type: CAZyme
Location: 270701 - 273316 (+)
Gene ID: HRGMv2_2676_1_248
Type: pfam
Location: 273427 - 274275 (-)
Type: pfam
Location: 273427 - 274275 (-)
Gene ID: HRGMv2_2676_1_249
Type: CAZyme
Location: 274279 - 276093 (-)
Type: CAZyme
Location: 274279 - 276093 (-)
Gene ID: HRGMv2_2676_1_250
Type: CAZyme
Location: 276098 - 278305 (-)
Type: CAZyme
Location: 276098 - 278305 (-)
Gene ID: HRGMv2_2676_1_251
Type: pfam
Location: 278387 - 279877 (-)
Type: pfam
Location: 278387 - 279877 (-)
Gene ID: HRGMv2_2676_1_252
Type: CAZyme
Location: 280106 - 281407 (+)
Type: CAZyme
Location: 280106 - 281407 (+)
Gene ID: HRGMv2_2676_1_253
Type: STP
Location: 281462 - 281998 (-)
Type: STP
Location: 281462 - 281998 (-)
Gene ID: HRGMv2_2676_1_254
Type: sulfatase
Location: 282261 - 283268 (+)
Type: sulfatase
Location: 282261 - 283268 (+)
Gene ID: HRGMv2_2676_1_255
Type: TC
Location: 283344 - 284690 (+)
Type: TC
Location: 283344 - 284690 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.