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Cluster: HRGMv2_2676_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2676_1 HRGMv2_2676_1_1684 1769096 1771567 - GH2
TC HRGMv2_2676_1 HRGMv2_2676_1_1685 1771564 1772976 - 2.A.2.3.2
TF HRGMv2_2676_1 HRGMv2_2676_1_1686 1773212 1774267 + HTH_AraC
pfam HRGMv2_2676_1 HRGMv2_2676_1_1687 1774287 1774538 - DUF6061
TC HRGMv2_2676_1 HRGMv2_2676_1_1688 1774981 1775652 + 9.B.18.1.2
Gene ID: HRGMv2_2676_1_1684
Type: CAZyme
Location: 1769096 - 1771567 (-)
Gene ID: HRGMv2_2676_1_1685
Type: TC
Location: 1771564 - 1772976 (-)
Gene ID: HRGMv2_2676_1_1686
Type: TF
Location: 1773212 - 1774267 (+)
Gene ID: HRGMv2_2676_1_1687
Type: pfam
Location: 1774287 - 1774538 (-)
Gene ID: HRGMv2_2676_1_1688
Type: TC
Location: 1774981 - 1775652 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2676_1_1684 vegan > omnivore 1.06775 0.02258
HRGMv2_2676_1_1684 vegetarian > omnivore 1.27674 0.02747
HRGMv2_2676_1_1685 vegan > omnivore 1.17354 0.02258
HRGMv2_2676_1_1685 vegetarian > omnivore 1.29275 0.02747
HRGMv2_2676_1_1686 vegan > omnivore 1.13279 0.02258
HRGMv2_2676_1_1686 vegetarian > omnivore 1.18589 0.02747

🧭 Explore Read Mapping of CGC

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