Cluster: HRGMv2_2676_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2676
- CGC Family ID: CGCFAM_01236
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1649 | 1727864 | 1728520 | - | 9.A.32.1.1 |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_1650 | 1729365 | 1729757 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_1651 | 1730260 | 1732089 | - | GH13_4 |
| STP | HRGMv2_2676_1 | HRGMv2_2676_1_1652 | 1732093 | 1733025 | - | PfkB |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_1653 | 1733062 | 1733679 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1654 | 1733666 | 1734316 | - | 9.B.28.1.2 |
| TF | HRGMv2_2676_1 | HRGMv2_2676_1_1655 | 1734334 | 1735389 | - | LacI |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1656 | 1735738 | 1736685 | + | 3.A.1.1.10 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1657 | 1736699 | 1737604 | + | 3.A.1.1.10 |
| STP | HRGMv2_2676_1 | HRGMv2_2676_1_1658 | 1737681 | 1739354 | + | SBP_bac_1 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_1659 | 1739379 | 1740854 | + | GH32 |
Gene ID: HRGMv2_2676_1_1649
Type: TC
Location: 1727864 - 1728520 (-)
Type: TC
Location: 1727864 - 1728520 (-)
Gene ID: HRGMv2_2676_1_1650
Type:
Location: 1729365 - 1729757 (-)
Type:
Location: 1729365 - 1729757 (-)
Gene ID: HRGMv2_2676_1_1651
Type: CAZyme
Location: 1730260 - 1732089 (-)
Type: CAZyme
Location: 1730260 - 1732089 (-)
Gene ID: HRGMv2_2676_1_1652
Type: STP
Location: 1732093 - 1733025 (-)
Type: STP
Location: 1732093 - 1733025 (-)
Gene ID: HRGMv2_2676_1_1653
Type:
Location: 1733062 - 1733679 (-)
Type:
Location: 1733062 - 1733679 (-)
Gene ID: HRGMv2_2676_1_1654
Type: TC
Location: 1733666 - 1734316 (-)
Type: TC
Location: 1733666 - 1734316 (-)
Gene ID: HRGMv2_2676_1_1655
Type: TF
Location: 1734334 - 1735389 (-)
Type: TF
Location: 1734334 - 1735389 (-)
Gene ID: HRGMv2_2676_1_1656
Type: TC
Location: 1735738 - 1736685 (+)
Type: TC
Location: 1735738 - 1736685 (+)
Gene ID: HRGMv2_2676_1_1657
Type: TC
Location: 1736699 - 1737604 (+)
Type: TC
Location: 1736699 - 1737604 (+)
Gene ID: HRGMv2_2676_1_1658
Type: STP
Location: 1737681 - 1739354 (+)
Type: STP
Location: 1737681 - 1739354 (+)
Gene ID: HRGMv2_2676_1_1659
Type: CAZyme
Location: 1739379 - 1740854 (+)
Type: CAZyme
Location: 1739379 - 1740854 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.