Cluster: HRGMv2_2676_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2676
- CGC Family ID: CGCFAM_00594
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1386 | 1449459 | 1450505 | - | 9.B.18.2.1 |
| pfam | HRGMv2_2676_1 | HRGMv2_2676_1_1387 | 1451294 | 1452085 | - | LicD |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_1388 | 1452107 | 1452766 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1389 | 1453254 | 1454477 | - | 2.A.66.2.10 |
| NULL(UNKNOWN) | HRGMv2_2676_1 | HRGMv2_2676_1_1390 | 1454474 | 1455655 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_1391 | 1455674 | 1456447 | - | GT26 |
| CAZyme | HRGMv2_2676_1 | HRGMv2_2676_1_1392 | 1456434 | 1458113 | - | GT4 |
| TC | HRGMv2_2676_1 | HRGMv2_2676_1_1393 | 1458150 | 1458824 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_2676_1_1386
Type: TC
Location: 1449459 - 1450505 (-)
Type: TC
Location: 1449459 - 1450505 (-)
Gene ID: HRGMv2_2676_1_1387
Type: pfam
Location: 1451294 - 1452085 (-)
Type: pfam
Location: 1451294 - 1452085 (-)
Gene ID: HRGMv2_2676_1_1388
Type:
Location: 1452107 - 1452766 (-)
Type:
Location: 1452107 - 1452766 (-)
Gene ID: HRGMv2_2676_1_1389
Type: TC
Location: 1453254 - 1454477 (-)
Type: TC
Location: 1453254 - 1454477 (-)
Gene ID: HRGMv2_2676_1_1390
Type:
Location: 1454474 - 1455655 (-)
Type:
Location: 1454474 - 1455655 (-)
Gene ID: HRGMv2_2676_1_1391
Type: CAZyme
Location: 1455674 - 1456447 (-)
Type: CAZyme
Location: 1455674 - 1456447 (-)
Gene ID: HRGMv2_2676_1_1392
Type: CAZyme
Location: 1456434 - 1458113 (-)
Type: CAZyme
Location: 1456434 - 1458113 (-)
Gene ID: HRGMv2_2676_1_1393
Type: TC
Location: 1458150 - 1458824 (-)
Type: TC
Location: 1458150 - 1458824 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2676_1_1387 | vegetarian > vegan | 1.23371 | 0.01319 |
| HRGMv2_2676_1_1388 | vegetarian > vegan | 1.21090 | 0.01319 |
| HRGMv2_2676_1_1389 | vegetarian > vegan | 1.31151 | 0.01319 |
| HRGMv2_2676_1_1390 | vegetarian > vegan | 7.82494 | 0.01319 |
| HRGMv2_2676_1_1391 | vegetarian > vegan | 1.89209 | 0.01319 |
| HRGMv2_2676_1_1392 | vegetarian > vegan | 1.28541 | 0.01319 |